View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_189 (Length: 251)
Name: NF1271_low_189
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_189 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 3411032 - 3411272
Alignment:
| Q |
1 |
catgccaaatgctagcttaagaatttatgcgcatgaaataaacacatcttacatcagattccgtatctcttccaattaatagaatacaaacataaatttt |
100 |
Q |
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| T |
3411032 |
catgccaaatgctagcttaagaatttatgcgcatgaaataaacacatcttacatcagattccatatctcttccaattaatataatacaaacatatatttt |
3411131 |
T |
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| Q |
101 |
tcattattggatacttagttattgaatggatactaataaaaggatggaaaatgtacaacctcataagtaacaatgactcctgattgttgaaaggaggcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3411132 |
tcattattggatacttagttattgaatggatactaataaaaggatggaaaatgtacaacctcataagtaacaatgactcctgattgttgaaaggaggcaa |
3411231 |
T |
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| Q |
201 |
tgccaactaaaccctgagctgaaagaatgcatatctctgtg |
241 |
Q |
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| T |
3411232 |
tgccaactaaaccctgagctgaaagaatgcatatctctgtg |
3411272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 240
Target Start/End: Complemental strand, 4243213 - 4243082
Alignment:
| Q |
110 |
gatacttagttattgaatggatactaataaaag-gatggaaaatgtacaacctcataagtaacaatgactcctgattgttgaaaggaggcaatgccaact |
208 |
Q |
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||||| |||||||||||||||| ||||||||| |||| ||||||||| ||||||||||||||||| |||| | |||| |||| ||||||| || |
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| T |
4243213 |
gatacgtagttattgaatggattctaataaaaaagatgtaaaatgtactacctcataagtaacaatccttccttcccgatgaagggagacaatgcctacc |
4243114 |
T |
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| Q |
209 |
aaaccctgagctgaaagaatgcatatctctgt |
240 |
Q |
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||||| ||||| ||||||||| | |||||||| |
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| T |
4243113 |
aaaccatgagcagaaagaatggacatctctgt |
4243082 |
T |
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