View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_19 (Length: 574)
Name: NF1271_low_19
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 95 - 570
Target Start/End: Original strand, 19578091 - 19578564
Alignment:
| Q |
95 |
tttggttcctaatgatgacaagtacaaagttgggtttcaagatttcgtgcatgcggttatgtcggttatggtgtttgtggctatcgctttttcggattat |
194 |
Q |
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| T |
19578091 |
tttggttcctaatgatgacaagtacaaagttgggtttcaagatttcgtgcatgcggttatgtcggttatggtgtttgtggctatcgctttttcggattat |
19578190 |
T |
|
| Q |
195 |
agggttactaattgtttatttcctggacatgaaaaagagatggatcaagttatggagagttttcctttgatggttggaataatttgtagcggtttgttcc |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19578191 |
agggttactaattgtttatttcctggacatgaaaaagagatggatcaagttatggagagttttcctttgatggttggaataatttgtagcggtttgttcc |
19578290 |
T |
|
| Q |
295 |
ttatttttcctacttcaaggcatggaattggatgcatgtcttcctaatttattagtatatatgttttctatttgtgtgcttgtttaatttgtttgctaac |
394 |
Q |
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| T |
19578291 |
ttatttttcctacttcaaggcatggaattggatgcatgtcttcctaatttattagtatatatgttttctatttgtgtgcttgtttaatttgtttgctaac |
19578390 |
T |
|
| Q |
395 |
tttatgtatatatatatctgtttaatttgtgccaaaacgatacgatggctgtgtaattttataaatattgattggagcaaatttagttcagttttttcac |
494 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19578391 |
tttatg--tatatatatctgtttaatttgtgacaaaacgatacaatggctgtgtaattttataaatattgattcgagcaaatttagttcagttttttcac |
19578488 |
T |
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| Q |
495 |
aatctttctgagtctataacaattgaatatgcgtagtactggttgcagtttgtggtatttcaatttcatctcactc |
570 |
Q |
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| T |
19578489 |
aatctttctgagtctataacaattgaatatgcgtagcactggttgcagtttgtggtatttcaatttcatatcactc |
19578564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 95 - 354
Target Start/End: Complemental strand, 2787503 - 2787244
Alignment:
| Q |
95 |
tttggttcctaatgatgacaagtacaaagttgggtttcaagatttcgtgcatgcggttatgtcggttatggtgtttgtggctatcgctttttcggattat |
194 |
Q |
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|||||||||||| || ||||| ||||| || |||||||||||||| || ||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
2787503 |
tttggttcctaacgacgacaaatacaaggtagggtttcaagattttgttcatgcagttatgtcagttatggtgtttgtggcgatcgctttttcggattat |
2787404 |
T |
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| Q |
195 |
agggttactaattgtttatttcctggacatgaaaaagagatggatcaagttatggagagttttcctttgatggttggaataatttgtagcggtttgttcc |
294 |
Q |
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| T |
2787403 |
agggtgagtaattgtttgtttcctggacatgaaagggaaatggatcaagttatggagagttttccattgatggttggaattgtttgtagcggtttgtttc |
2787304 |
T |
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| Q |
295 |
ttatttttcctacttcaaggcatggaattggatgcatgtcttcctaatttattagtatat |
354 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||| |||||||| ||||||||| |
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| T |
2787303 |
ttatttttccaacttcaaggcgtggaattggatgcatgtctgcctaattttttagtatat |
2787244 |
T |
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