View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_192 (Length: 251)

Name: NF1271_low_192
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_192
NF1271_low_192
[»] chr6 (6 HSPs)
chr6 (30-186)||(25067742-25067898)
chr6 (77-184)||(25067137-25067244)
chr6 (137-189)||(29290120-29290172)
chr6 (86-156)||(10608267-10608338)
chr6 (132-186)||(16764925-16764979)
chr6 (114-186)||(34035020-34035092)
[»] chr8 (3 HSPs)
chr8 (85-191)||(35943071-35943177)
chr8 (98-187)||(35943799-35943888)
chr8 (85-186)||(42573579-42573681)
[»] chr7 (10 HSPs)
chr7 (98-186)||(42607081-42607169)
chr7 (98-184)||(40257762-40257848)
chr7 (85-186)||(42607760-42607860)
chr7 (98-186)||(6730118-6730205)
chr7 (98-180)||(44540994-44541076)
chr7 (98-179)||(6729405-6729486)
chr7 (98-186)||(40257580-40257668)
chr7 (138-186)||(40258734-40258782)
chr7 (137-186)||(32548672-32548721)
chr7 (124-184)||(24996669-24996729)
[»] chr2 (4 HSPs)
chr2 (109-180)||(41767881-41767952)
chr2 (124-186)||(34617653-34617715)
chr2 (85-159)||(6084898-6084972)
chr2 (137-186)||(5006307-5006355)
[»] chr4 (14 HSPs)
chr4 (124-180)||(38010834-38010890)
chr4 (86-156)||(46764282-46764353)
chr4 (137-179)||(33369916-33369958)
chr4 (86-156)||(25655586-25655657)
chr4 (132-186)||(36013946-36014000)
chr4 (137-186)||(33370874-33370923)
chr4 (130-186)||(19129525-19129580)
chr4 (86-156)||(11680306-11680377)
chr4 (86-156)||(11688585-11688656)
chr4 (124-159)||(34371489-34371524)
chr4 (132-187)||(47326783-47326838)
chr4 (132-187)||(47341579-47341634)
chr4 (115-159)||(25970780-25970824)
chr4 (138-186)||(34154794-34154842)
[»] chr5 (6 HSPs)
chr5 (124-186)||(35262452-35262514)
chr5 (137-179)||(32943524-32943566)
chr5 (137-186)||(32944483-32944532)
chr5 (107-159)||(6803975-6804027)
chr5 (130-186)||(36912246-36912301)
chr5 (124-180)||(35263295-35263351)
[»] chr1 (5 HSPs)
chr1 (85-159)||(45923078-45923152)
chr1 (124-180)||(2684857-2684913)
chr1 (85-159)||(45922259-45922334)
chr1 (130-186)||(2687719-2687775)
chr1 (138-186)||(4640528-4640576)
[»] chr3 (1 HSPs)
chr3 (132-186)||(31598788-31598842)


Alignment Details
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 30 - 186
Target Start/End: Original strand, 25067742 - 25067898
Alignment:
Q  30 gtggtgggtgaaagttgggaaatagattgtagaaggtcggtcattaaatatgctattgagagactataataagattgtgtttcttatttgattcaatgga 129  Q
    ||||||||||||||||||||||| || |||||||||| |||  ||||||||| | ||||||||||||||||||||||| ||||||||||||| |||||||    
T  25067742 gtggtgggtgaaagttgggaaatggagtgtagaaggtgggtggttaaatatggtgttgagagactataataagattgtatttcttatttgatccaatgga 25067841  T
Q  130 caaaaacaactttcccatggtgggaaacaaatatcattttccatgctaaactccacc 186  Q
    ||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||    
T  25067842 caaaaacaactttcctatggtgggaaacaaatatcctttcccatgctaaaccccacc 25067898  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 25067244 - 25067137
Alignment:
Q  77 atatgctattgagagactataataagattgtgtttcttatttgattcaatggacaaaaacaactttcccatggtgggaaacaaatatcattttccatgct 176  Q
    ||||| ||||||||||| |||||||| |||||||| | |||||||  ||||||||||||||||| |||||| |||| |||||| |||||||| |||||||    
T  25067244 atatggtattgagagaccataataagcttgtgtttttcatttgatctaatggacaaaaacaactctcccatagtggaaaacaagtatcatttcccatgct 25067145  T
Q  177 aaactcca 184  Q
    ||||||||    
T  25067144 aaactcca 25067137  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 29290172 - 29290120
Alignment:
Q  137 aactttcccatggtgggaaacaaatatcattttccatgctaaactccacccta 189  Q
    ||||||||||||||||||||||| | ||  |||||||||||||| ||||||||    
T  29290172 aactttcccatggtgggaaacaactctccatttccatgctaaaccccacccta 29290120  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 10608267 - 10608338
Alignment:
Q  86 tgagagactataataagattgtgtttcttatttgattcaatggacaaaaac-aactttcccatggtgggaaa 156  Q
    |||||||| ||||||| |||||||| | ||||| ||  ||||| ||||||| ||||||||||||||||||||    
T  10608267 tgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttcccatggtgggaaa 10608338  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 16764979 - 16764925
Alignment:
Q  132 aaaacaactttcccatggtgggaaacaaatatcattttccatgctaaactccacc 186  Q
    |||| ||||| ||||||||||||||||| | || ||| |||||||||||||||||    
T  16764979 aaaaaaacttccccatggtgggaaacaactttcctttcccatgctaaactccacc 16764925  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 34035020 - 34035092
Alignment:
Q  114 tatttgattcaatggacaaaaacaactttcccatggtgggaaacaaatatcattttccatgctaaactccacc 186  Q
    |||||||| ||||||   |||| |||||||||||| |||||||||| | || ||| ||||| |||||||||||    
T  34035020 tatttgatccaatggtttaaaataactttcccatgatgggaaacaattctcctttcccatgttaaactccacc 34035092  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 191
Target Start/End: Complemental strand, 35943177 - 35943071
Alignment:
Q  85 ttgagagactataataagattgtgtttcttatttgattcaatggacaaaaacaactttcccatggtgggaaacaaatatcattttccatgctaaactcca 184  Q
    |||| |||| || |||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| |  | ||| ||||||||||| |||    
T  35943177 ttgatagaccatgataagattgtgtttctcatttgattcaatggacaaaaaaaacttccccatggtgggaaacaacttccctttcccatgctaaacccca 35943078  T
Q  185 ccctatt 191  Q
    || ||||    
T  35943077 ccttatt 35943071  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 35943799 - 35943888
Alignment:
Q  98 ataagattgtgtttcttatttgattcaatggacaaaaacaactttcccatggtgggaaacaaatatcattttccatgctaaactccaccc 187  Q
    |||||||||||||||| ||||||| ||| |||||| || |||||| |||| ||||||||||| | || ||| ||||||||||| ||||||    
T  35943799 ataagattgtgtttctcatttgatccaagggacaagaaaaacttttccatagtgggaaacaattctcctttcccatgctaaaccccaccc 35943888  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 186
Target Start/End: Complemental strand, 42573681 - 42573579
Alignment:
Q  85 ttgagagactataataagattgtgtttcttatttgattcaatggacaaaaac-aactttcccatggtgggaaacaaatatcattttccatgctaaactcc 183  Q
    ||||||||||||||||| || ||||| | ||||| ||| ||||| ||||||| || |||| |||||||||||| || ||   ||||| |||||||| |||    
T  42573681 ttgagagactataataacatcgtgttccctatttaatttaatggtcaaaaactaattttctcatggtgggaaaaaattagtcttttctatgctaaattcc 42573582  T
Q  184 acc 186  Q
    |||    
T  42573581 acc 42573579  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 42607169 - 42607081
Alignment:
Q  98 ataagattgtgtttcttatttgattcaatggacaaaaacaactttcccatggtgggaaacaaatatcattttccatgctaaactccacc 186  Q
    |||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||| |  | ||| ||||||||||| |||||    
T  42607169 ataagattgtgtttctcatttgatctaatggacaaaaacaactttcccatggtgggaaacaattcccctttcccatgctaaaccccacc 42607081  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 40257762 - 40257848
Alignment:
Q  98 ataagattgtgtttcttatttgattcaatggacaaaaacaactttcccatggtgggaaacaaatatcattttccatgctaaactcca 184  Q
    |||||| ||||||||| |||||||  |||||||||||||||||||| ||||||||||||||| |  ||||| |||||||||||||||    
T  40257762 ataagaatgtgtttctcatttgatctaatggacaaaaacaactttctcatggtgggaaacaactcccatttcccatgctaaactcca 40257848  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 42607760 - 42607860
Alignment:
Q  85 ttgagagactataataagattgtgtttcttatttgattcaatggacaaaaacaactttcccatggtgggaaacaaatatcattttccatgctaaactcca 184  Q
    |||| ||| ||| |||||||||||||||| ||||||| ||||||||||||| |||||||| ||| |||||||||| |  | ||||||||||||||| |||    
T  42607760 ttgatagattatgataagattgtgtttctcatttgat-caatggacaaaaataactttcctatgatgggaaacaattccccttttccatgctaaacccca 42607858  T
Q  185 cc 186  Q
    ||    
T  42607859 cc 42607860  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 6730118 - 6730205
Alignment:
Q  98 ataagattgtgtttcttatttgattcaatggacaaaaacaactttcccatggtgggaaacaaatatcattttccatgctaaactccacc 186  Q
    |||||||||||||||| ||||||| ||||||||||||| || || ||||||||||||||||| |  | ||| ||||||||||| |||||    
T  6730118 ataagattgtgtttctcatttgatccaatggacaaaaa-aaattccccatggtgggaaacaacttccctttcccatgctaaaccccacc 6730205  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 44541076 - 44540994
Alignment:
Q  98 ataagattgtgtttcttatttgattcaatggacaaaaacaactttcccatggtgggaaacaaatatcattttccatgctaaac 180  Q
    ||||||||||||||||||||||||  |||| | |||||||| |||  ||||||||||||||| | || ||| |||||||||||    
T  44541076 ataagattgtgtttcttatttgatctaatgaataaaaacaattttttcatggtgggaaacaactctcctttcccatgctaaac 44540994  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 6729486 - 6729405
Alignment:
Q  98 ataagattgtgtttcttatttgattcaatggacaaaaacaactttcccatggtgggaaacaaatatcattttccatgctaaa 179  Q
    |||||||||||||||| ||||||| ||| |||||| || ||||||||||| |||| |||||| | || ||| ||||||||||    
T  6729486 ataagattgtgtttctcatttgatccaagggacaagaaaaactttcccatagtggaaaacaattctcctttcccatgctaaa 6729405  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 40257668 - 40257580
Alignment:
Q  98 ataagattgtgtttcttatttgattcaatggacaaaaacaactttcccatggtgggaaacaaatatcattttccatgctaaactccacc 186  Q
    |||||| ||||||||| |||||||  |||||||||||| |||||| ||||||| | |||||| | |||||| |||| |||||| |||||    
T  40257668 ataagaatgtgtttctcatttgatctaatggacaaaaataacttttccatggtcgaaaacaactctcatttcccatactaaaccccacc 40257580  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 40258734 - 40258782
Alignment:
Q  138 actttcccatggtgggaaacaaatatcattttccatgctaaactccacc 186  Q
    |||||||||||||| ||||||| |||||||| |||||||||||||||||    
T  40258734 actttcccatggtgagaaacaattatcatttcccatgctaaactccacc 40258782  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 32548672 - 32548721
Alignment:
Q  137 aactttcccatggtgggaaacaaatatcattttccatgctaaactccacc 186  Q
    ||||||||||||||||||||||| |||||||| |||| |||||| |||||    
T  32548672 aactttcccatggtgggaaacaagtatcatttcccatactaaaccccacc 32548721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 24996669 - 24996729
Alignment:
Q  124 aatggacaaaaacaactttcccatggtgggaaacaaatatcattttccatgctaaactcca 184  Q
    ||||| ||||||  |||||||||||||||||||||| |  | ||| |||||||||||||||    
T  24996669 aatggtcaaaaaatactttcccatggtgggaaacaactcccctttcccatgctaaactcca 24996729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 180
Target Start/End: Complemental strand, 41767952 - 41767881
Alignment:
Q  109 tttcttatttgattcaatggacaaaaacaactttcccatggtgggaaacaaatatcattttccatgctaaac 180  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||  | |||||| |||| ||||||    
T  41767952 tttcttatttgattcaatggacaaaaaaaactttcctatggtgggaaacagttctcatttcccatactaaac 41767881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 34617715 - 34617653
Alignment:
Q  124 aatggacaaaaacaactttcccatggtgggaaacaaatatcattttccatgctaaactccacc 186  Q
    ||||| |||||| ||||||||||||||||||||||| |||| ||| ||||||||||| |||||    
T  34617715 aatggtcaaaaataactttcccatggtgggaaacaattatcctttcccatgctaaaccccacc 34617653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 6084972 - 6084898
Alignment:
Q  85 ttgagagactataataagattgtgtttcttatttgattcaatggacaaaaacaactttcccatggtgggaaacaa 159  Q
    |||| ||||||| |||| ||| |||||||||  ||||| ||||| || ||| |||||||||||| ||||||||||    
T  6084972 ttgaaagactatgataatattatgtttcttacatgatttaatggtcataaaaaactttcccatgatgggaaacaa 6084898  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 5006307 - 5006355
Alignment:
Q  137 aactttcccatggtgggaaacaaatatcattttccatgctaaactccacc 186  Q
    ||||||| |||||||||||  || ||||||||||||||||||||||||||    
T  5006307 aactttctcatggtgggaat-aactatcattttccatgctaaactccacc 5006355  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 38010834 - 38010890
Alignment:
Q  124 aatggacaaaaacaactttcccatggtgggaaacaaatatcattttccatgctaaac 180  Q
    ||||||||||||||||||||||||| ||| ||||||||||| ||| |||||||||||    
T  38010834 aatggacaaaaacaactttcccatgatggaaaacaaatatcctttcccatgctaaac 38010890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 46764353 - 46764282
Alignment:
Q  86 tgagagactataataagattgtgtttcttatttgattcaatggacaaaaac-aactttcccatggtgggaaa 156  Q
    |||||||| ||||||| |||||||||| ||||| ||| ||||| ||||||| ||||||||||||||||||||    
T  46764353 tgagagaccataataacattgtgtttcctatttaatttaatggtcaaaaactaactttcccatggtgggaaa 46764282  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 33369958 - 33369916
Alignment:
Q  137 aactttcccatggtgggaaacaaatatcattttccatgctaaa 179  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  33369958 aactttcccatggtgggaaacaaatatcatttcccatgctaaa 33369916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 25655586 - 25655657
Alignment:
Q  86 tgagagactataataagattgtgtttcttatttgattcaatggacaaaaac-aactttcccatggtgggaaa 156  Q
    |||||||| ||||||| |||||||||| ||||| ||  ||||| ||||||| ||||||||||||||||||||    
T  25655586 tgagagaccataataacattgtgtttcctatttaatctaatggtcaaaaactaactttcccatggtgggaaa 25655657  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 36013946 - 36014000
Alignment:
Q  132 aaaacaactttcccatggtgggaaacaaatatcattttccatgctaaactccacc 186  Q
    |||| |||||||||||||||| |||||| | |||||| |||||||||||||||||    
T  36013946 aaaaaaactttcccatggtggtaaacaactttcatttcccatgctaaactccacc 36014000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 33370874 - 33370923
Alignment:
Q  137 aactttcccatggtgggaaacaaatatcattttccatgctaaactccacc 186  Q
    ||||||||||||||||||||||| |||| ||| ||||||||||| |||||    
T  33370874 aactttcccatggtgggaaacaagtatcctttcccatgctaaaccccacc 33370923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 19129580 - 19129525
Alignment:
Q  130 caaaaacaactttcccatggtgggaaacaaatatcattttccatgctaaactccacc 186  Q
    ||||||||||||||||||||||||| | ||||| | |||| ||||||||||||||||    
T  19129580 caaaaacaactttcccatggtgggaga-aaatagcctttttcatgctaaactccacc 19129525  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 11680377 - 11680306
Alignment:
Q  86 tgagagactataataagattgtgtttcttatttgattcaatggacaaaaac-aactttcccatggtgggaaa 156  Q
    |||||||| ||||||| |||||||| | ||||| ||  ||||| ||||||| ||||||||||||||||||||    
T  11680377 tgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttcccatggtgggaaa 11680306  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 11688656 - 11688585
Alignment:
Q  86 tgagagactataataagattgtgtttcttatttgattcaatggacaaaaac-aactttcccatggtgggaaa 156  Q
    |||||||| ||||||| |||||||| | ||||| ||  ||||| ||||||| ||||||||||||||||||||    
T  11688656 tgagagaccataataacattgtgttccctatttaatctaatggtcaaaaactaactttcccatggtgggaaa 11688585  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 34371524 - 34371489
Alignment:
Q  124 aatggacaaaaacaactttcccatggtgggaaacaa 159  Q
    |||||||||||| |||||||||||||||||||||||    
T  34371524 aatggacaaaaaaaactttcccatggtgggaaacaa 34371489  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 47326783 - 47326838
Alignment:
Q  132 aaaacaactttcccatggtgggaaacaaatatcattttccatgctaaactccaccc 187  Q
    |||| ||||||||||||||||||||||| | || ||| |||||||| |||||||||    
T  47326783 aaaaaaactttcccatggtgggaaacaactttcctttcccatgctatactccaccc 47326838  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 47341579 - 47341634
Alignment:
Q  132 aaaacaactttcccatggtgggaaacaaatatcattttccatgctaaactccaccc 187  Q
    |||| ||||||||||||||||||||||| | || ||| |||||||| |||||||||    
T  47341579 aaaaaaactttcccatggtgggaaacaactttcctttcccatgctatactccaccc 47341634  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 25970780 - 25970824
Alignment:
Q  115 atttgattcaatggacaaaaacaactttcccatggtgggaaacaa 159  Q
    |||| |||||||||||| || |||||||| |||||||||||||||    
T  25970780 atttaattcaatggacataatcaactttctcatggtgggaaacaa 25970824  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 34154842 - 34154794
Alignment:
Q  138 actttcccatggtgggaaacaaatatcattttccatgctaaactccacc 186  Q
    |||||||||||||||||||||| | || ||| ||||||||||| |||||    
T  34154842 actttcccatggtgggaaacaagtttcttttcccatgctaaaccccacc 34154794  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 35262514 - 35262452
Alignment:
Q  124 aatggacaaaaacaactttcccatggtgggaaacaaatatcattttccatgctaaactccacc 186  Q
    ||||| |||||| |||||||||||||| |||||||| |||| ||| |||||||||||||||||    
T  35262514 aatggtcaaaaataactttcccatggtaggaaacaattatcctttcccatgctaaactccacc 35262452  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 32943566 - 32943524
Alignment:
Q  137 aactttcccatggtgggaaacaaatatcattttccatgctaaa 179  Q
    |||||||||||||||||||||||||||| ||| ||||||||||    
T  32943566 aactttcccatggtgggaaacaaatatcctttcccatgctaaa 32943524  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 32944483 - 32944532
Alignment:
Q  137 aactttcccatggtgggaaacaaatatcattttccatgctaaactccacc 186  Q
    |||||| |||||||||||||||| |||||||| ||||||||||| |||||    
T  32944483 aacttttccatggtgggaaacaagtatcatttcccatgctaaaccccacc 32944532  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 6804027 - 6803975
Alignment:
Q  107 tgtttcttatttgattcaatggacaaaaacaactttcccatggtgggaaacaa 159  Q
    ||||||||||||||| ||||||||||||| || ||||| ||||| ||||||||    
T  6804027 tgtttcttatttgatccaatggacaaaaagaaatttcctatggtaggaaacaa 6803975  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 36912301 - 36912246
Alignment:
Q  130 caaaaacaactttcccatggtgggaaacaaatatcattttccatgctaaactccacc 186  Q
    ||||||||||||||||||||||||||| ||||| | ||| ||||||||||| |||||    
T  36912301 caaaaacaactttcccatggtgggaaa-aaatagcctttcccatgctaaaccccacc 36912246  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 35263295 - 35263351
Alignment:
Q  124 aatggacaaaaacaactttcccatggtgggaaacaaatatcattttccatgctaaac 180  Q
    |||||| |||||||||||| ||||| ||| |||||| |||| ||| |||||||||||    
T  35263295 aatggataaaaacaacttttccatgatggaaaacaactatcctttcccatgctaaac 35263351  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 45923078 - 45923152
Alignment:
Q  85 ttgagagactataataagattgtgtttcttatttgattcaatggacaaaaacaactttcccatggtgggaaacaa 159  Q
    |||| |||| || ||||||||||||||||| ||||||  |||||||||||| |||||| ||||||||| ||||||    
T  45923078 ttgatagaccatgataagattgtgtttcttgtttgatctaatggacaaaaaaaacttttccatggtggaaaacaa 45923152  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 2684913 - 2684857
Alignment:
Q  124 aatggacaaaaacaactttcccatggtgggaaacaaatatcattttccatgctaaac 180  Q
    |||||||||||||||||||| |||| ||| ||||||||||| ||| |||||||||||    
T  2684913 aatggacaaaaacaactttctcatgatggaaaacaaatatcctttcccatgctaaac 2684857  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 45922334 - 45922259
Alignment:
Q  85 ttgagagactataataagattgtgtttcttatttgattcaatggacaaaaacaa-ctttcccatggtgggaaacaa 159  Q
    |||| |||| || ||||||||||||||||| ||||||  ||| |||||||| || |||||||||||||||||||||    
T  45922334 ttgatagaccatgataagattgtgtttcttgtttgatctaatagacaaaaaaaaactttcccatggtgggaaacaa 45922259  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 2687719 - 2687775
Alignment:
Q  130 caaaaacaactttcccatggtgggaaacaaatatcattttccatgctaaactccacc 186  Q
    |||||| || |||||||||||||||||||| |||| ||| ||||||||||| |||||    
T  2687719 caaaaataattttcccatggtgggaaacaattatcctttcccatgctaaaccccacc 2687775  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 4640576 - 4640528
Alignment:
Q  138 actttcccatggtgggaaacaaatatcattttccatgctaaactccacc 186  Q
    |||||||||||||||||||||| |  | ||| |||||||||||||||||    
T  4640576 actttcccatggtgggaaacaattcccctttaccatgctaaactccacc 4640528  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 31598788 - 31598842
Alignment:
Q  132 aaaacaactttcccatggtgggaaacaaatatcattttccatgctaaactccacc 186  Q
    |||| ||||||||||||||||||||||| | |  |||||||||||||||| ||||    
T  31598788 aaaaaaactttcccatggtgggaaacaacttttcttttccatgctaaacttcacc 31598842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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