View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_194 (Length: 251)
Name: NF1271_low_194
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_194 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 27 - 243
Target Start/End: Complemental strand, 24708762 - 24708546
Alignment:
| Q |
27 |
tagaagctcccatatgtatctatcattgttttttactcggccactatgaagacatagaattaaaagttattgggaataagagaaacctgaaagaacacat |
126 |
Q |
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| T |
24708762 |
tagaaactcccatatgtctctatcattgttttttaatcggccactatgaagacaataaattaaacgttatttggaataagagaaacctgaaagaacacat |
24708663 |
T |
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| Q |
127 |
tgtagtccatccagaaagttggatactgcaataattggcaacatagttgctacatatttgacaacttcttcttcattgctataagcgtatcccaatatat |
226 |
Q |
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| T |
24708662 |
tgaagtccatccagaaagttggatactgcaataataggcaacatagttgctacatatttgacaacttcttcttcattgctataagcgtatcccaatatat |
24708563 |
T |
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| Q |
227 |
tgcgaattagtataatc |
243 |
Q |
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||||||||||||||||| |
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| T |
24708562 |
tgcgaattagtataatc |
24708546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 26 - 243
Target Start/End: Original strand, 30511132 - 30511348
Alignment:
| Q |
26 |
ttagaagctcccatatgtatctatcattgttttttactcggccactatgaagacatagaattaaaagttattgggaataagagaaacctgaaagaacaca |
125 |
Q |
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|||||||||||||| ||| |||||| |||||||| |||| | | ||||||||| | | ||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
30511132 |
ttagaagctcccatttgtctctatcgttgtttttgactcagtctctatgaagaaaga-aattaaaagttatagggaagaagagaaacctgaaagaacact |
30511230 |
T |
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| Q |
126 |
ttgtagtccatccagaaagttggatactgcaataattggcaacatagttgctacatatttgacaacttcttcttcattgctataagcgtatcccaatata |
225 |
Q |
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| T |
30511231 |
ttgtattccatccagaaagttggatactgcaataataggcaacataattgctacatatttgacaacttcttcttcattgctataagcatatccccatata |
30511330 |
T |
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| Q |
226 |
ttgcgaattagtataatc |
243 |
Q |
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|||||||||||||||||| |
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| T |
30511331 |
ttgcgaattagtataatc |
30511348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 241
Target Start/End: Original strand, 30501554 - 30501645
Alignment:
| Q |
150 |
tactgcaataattggcaacatagttgctacatatttgacaacttcttcttcattgctataagcgtatcccaatatattgcgaattagtataa |
241 |
Q |
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| T |
30501554 |
tactgcaagaagtggcatcatatttgctacatatttgaccacttcttcttcattgctataagcatatccccatatattgcgaattagcataa |
30501645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 30483551 - 30483685
Alignment:
| Q |
109 |
aaacctgaaagaacacattgtagtccatccagaaagttggatactgcaataattggcaacatagttgctacatatttgacaacttcttcttcattgctat |
208 |
Q |
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| T |
30483551 |
aaacctgaaagaacagcttgcatgccatctagtaagtgggatacggcaagaattggcatcatagttgctacataatttaccacttcttcttcattgctat |
30483650 |
T |
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| Q |
209 |
aagcgtatcccaatatattgcgaattagtataatc |
243 |
Q |
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| T |
30483651 |
aagcgtagccccataaattacgaactagtataatc |
30483685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 30475659 - 30475736
Alignment:
| Q |
117 |
aagaacacattgtagtccatccagaaagttggatactgcaataattggcaacatagttgctacatatttgacaacttc |
194 |
Q |
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|||||||| ||||||| ||||||||||| ||||||||||| |||||| |||||| |||||| | |||||||||||| |
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| T |
30475659 |
aagaacactttgtagtgaatccagaaagtaggatactgcaagaattggtaacataattgctatttgtttgacaacttc |
30475736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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