View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1271_low_197 (Length: 251)
Name: NF1271_low_197
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_197 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 16193628 - 16193386
Alignment:
| Q |
9 |
caacaatatcatcaccattcaaatattccttaagaaacccttccaccataactctaggcacacaagtgaagaaaactctacaccctactgaaaccaaaac |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16193628 |
caacaatatcatcaccattcaaatattccttaagaaacccttccaccataactctaggcacacaagtgaagaaaactctacaccctactgagaccaaaac |
16193529 |
T |
|
| Q |
109 |
ctcataagccttaaggttaagattctccatgtaaaactttggtaaaactacccttgcaatcatttccatgttctttattttcagtccacaaaaagtgatg |
208 |
Q |
| |
|
|| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
16193528 |
ctgataagctttaaggttaaggttctccatgtaaaactttggtaaaactacccttgcaatcatttccatgtccttaattttaagtccacaaaaagtgatg |
16193429 |
T |
|
| Q |
209 |
aagatcatgactttaagtttatgttcatagctcaaaaagcata |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16193428 |
aagatcatgactttaagtttatgttcatagctcaaaaagcata |
16193386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 187
Target Start/End: Original strand, 39976901 - 39977041
Alignment:
| Q |
47 |
ccttccaccataactctaggcacacaagtgaagaaaactctacaccctactgaaaccaaaacctcataagccttaaggttaagattctccatgtaaaact |
146 |
Q |
| |
|
||||| ||||||||||||||||||| |||| | |||| || |||| ||||| | | || ||||||| | | ||| ||||||||||| | ||||||| |
|
|
| T |
39976901 |
ccttctaccataactctaggcacacttgtgataacaactttagacccagctgaagcaagaatctcataaacttgaagattaagattctctaaataaaact |
39977000 |
T |
|
| Q |
147 |
ttggtaaaactacccttgcaatcatttccatgttctttatt |
187 |
Q |
| |
|
|||||||||| |||||| || ||||||||| ||||||| |
|
|
| T |
39977001 |
ttggtaaaacagcccttgaaacattttccatgtcctttatt |
39977041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University