View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_2 (Length: 710)

Name: NF1271_low_2
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_2
NF1271_low_2
[»] chr4 (4 HSPs)
chr4 (30-425)||(1634997-1635391)
chr4 (568-703)||(55205731-55205861)
chr4 (431-491)||(50348193-50348253)
chr4 (433-496)||(22536909-22536972)
[»] chr7 (8 HSPs)
chr7 (573-703)||(46164545-46164675)
chr7 (575-703)||(10091632-10091757)
chr7 (426-496)||(46169358-46169428)
chr7 (574-703)||(46513396-46513522)
chr7 (433-496)||(10092351-10092414)
chr7 (615-699)||(26339860-26339945)
chr7 (431-496)||(46513595-46513660)
chr7 (454-496)||(46164427-46164469)
[»] chr1 (6 HSPs)
chr1 (573-703)||(48986130-48986260)
chr1 (425-496)||(48990944-48991015)
chr1 (422-496)||(48985980-48986054)
chr1 (426-489)||(25492045-25492108)
chr1 (433-496)||(52432980-52433043)
chr1 (454-496)||(19880772-19880814)
[»] chr5 (1 HSPs)
chr5 (433-496)||(8740448-8740511)


Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 30 - 425
Target Start/End: Complemental strand, 1635391 - 1634997
Alignment:
Q  30 atttcatcacattttgacactttcaatccataaataaagtgttgttaaggatnnnnnnnttgttaggacaacacacaaaatatattttatttcctttttt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||||||||||||||||||||    
T  1635391 atttcatcacattttgacactttcaatccataaataaagtgttgttaaggataaaaaa-ttgttaggacaacacacgaaatatattttatttcctttttt 1635293  T
Q  130 agatttggtccactcatgggaaaatgactagcttcaccgatgattatggatcttctaaatgaagacttaagatttatatcacaaatattttaaagaagtc 229  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1635292 agatttggtccactcatgaaaaaatgactagcttcaccgatgattatggatcttctaaatgaagacttaagatttatatcacaaatattttaaagaagtc 1635193  T
Q  230 aagtgtcacaatccaatctcaggtcgtgactggtgcacaagctaataatgactcgtcataaattaggatgtttgcggtgcgatttgaattggttttaaaa 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  1635192 aagtgtcacaatccaatctcaggtcgtgactggtgcacaagctaataatgactcgtcataaattaggatgtttgcggtgcggtttggattggttttaaaa 1635093  T
Q  330 caaaaagtcgtttaatcaaaaatataaatcacatgcagtttcggtttgcttttaataactatttacctcaaaaccaatccaaagaacatcataaat 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1635092 caaaaagtcgtttaatcaaaaatataaatcacatgcagtttcggtttgcttttaataactatttacctcaaaaccaatccaaagaatatcataaat 1634997  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 568 - 703
Target Start/End: Complemental strand, 55205861 - 55205731
Alignment:
Q  568 aggagaaacacgcgcttctcttctcttcttctttcatacgtgaacgttactcactctcttttcagcttcccttagaacctcttcgttt--ccctctcatc 665  Q
    ||||||||||||||||||||||||  |||||| || ||||||||| |||||||||||||     ||||||||  ||| |||||||| |  ||||||||||    
T  55205861 aggagaaacacgcgcttctcttct--tcttctctcttacgtgaactttactcactctct-----gcttccctcggaatctcttcgtctccccctctcatc 55205769  T
Q  666 agcgccaacaatcgccgattgtgccgccgttcatctca 703  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  55205768 agcgccaacaaccaccgattgtgccgccgttcatctca 55205731  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 491
Target Start/End: Complemental strand, 50348253 - 50348193
Alignment:
Q  431 caggtatgctccatttaccaccagctccatttaccccatttagggccttggatgagtgaca 491  Q
    |||||||||||||||||||||  ||| ||||||| ||||||||||  |||||||| |||||    
T  50348253 caggtatgctccatttaccacatgcttcatttactccatttagggtattggatgaatgaca 50348193  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 496
Target Start/End: Complemental strand, 22536972 - 22536909
Alignment:
Q  433 ggtatgctccatttaccaccagctccatttaccccatttagggccttggatgagtgacacgtgg 496  Q
    |||||||| |||||||||   ||||||||||||||||||||||  |||||||| ||||| ||||    
T  22536972 ggtatgcttcatttaccatatgctccatttaccccatttagggtgttggatgaatgacatgtgg 22536909  T

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Target: chr7 (Bit Score: 115; Significance: 5e-58; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 573 - 703
Target Start/End: Original strand, 46164545 - 46164675
Alignment:
Q  573 aaacacgcgcttctcttctcttcttctttcatacgtgaacgttactcactctcttttcagcttcccttagaacctcttcgtttccctctcatcagcgcca 672  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  46164545 aaacacgcgcttctcttctcttcttctttcatacgtgaacgttgcccactctcttttcagcttcccttagaacctcttcgtttccctgtcatcagcgcca 46164644  T
Q  673 acaatcgccgattgtgccgccgttcatctca 703  Q
    |||| ||||||||||||||||||||||||||    
T  46164645 acaaccgccgattgtgccgccgttcatctca 46164675  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 575 - 703
Target Start/End: Original strand, 10091632 - 10091757
Alignment:
Q  575 acacgcgcttctcttctcttcttctttcatacgtgaacgttactcactctcttttcagcttcccttagaacctcttcgtttccctctcatcagcgccaac 674  Q
    ||||||| ||||||||||||||    ||||| ||||| ||||||| |||| |||||||||||||| | ||||||||||||||||||||||||||||||||    
T  10091632 acacgcgtttctcttctcttctc---tcataagtgaaagttactcgctctgttttcagcttccctcaaaacctcttcgtttccctctcatcagcgccaac 10091728  T
Q  675 aatcgccgattgtgccgccgttcatctca 703  Q
    || || |||||||||||||||||||||||    
T  10091729 aaccgtcgattgtgccgccgttcatctca 10091757  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 426 - 496
Target Start/End: Complemental strand, 46169428 - 46169358
Alignment:
Q  426 gagcgcaggtatgctccatttaccaccagctccatttaccccatttagggccttggatgagtgacacgtgg 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  46169428 gagcgcaggtatgctccatttaccaccagctccatttaccccatttagggtcttggatgagtgacatgtgg 46169358  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 574 - 703
Target Start/End: Complemental strand, 46513522 - 46513396
Alignment:
Q  574 aacacgcgcttctcttctcttcttctttcatacgtgaacgttactcactctcttttcagcttcccttagaacctcttcgtttccc-tctcatcagcgcca 672  Q
    ||||||||||| ||||||||||||||    ||||||||||||||  |||||||||| ||||||||| |||| |||||||| |||| ||||| |||| |||    
T  46513522 aacacgcgcttgtcttctcttcttctag--tacgtgaacgttac--actctcttttgagcttccctcagaatctcttcgtctcccctctcaccagcacca 46513427  T
Q  673 acaatcgccgattgtgccgccgttcatctca 703  Q
    |||| ||||||||||| ||||||||||||||    
T  46513426 acaaccgccgattgtgtcgccgttcatctca 46513396  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 433 - 496
Target Start/End: Complemental strand, 10092414 - 10092351
Alignment:
Q  433 ggtatgctccatttaccaccagctccatttaccccatttagggccttggatgagtgacacgtgg 496  Q
    |||||||||||||||||| ||||||||||||||||||||| || ||||||||| ||||| ||||    
T  10092414 ggtatgctccatttaccatcagctccatttaccccatttaaggtcttggatgaatgacatgtgg 10092351  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 615 - 699
Target Start/End: Complemental strand, 26339945 - 26339860
Alignment:
Q  615 tactcactctcttttcagcttcccttagaacctcttcgtttccc-tctcatcagcgccaacaatcgccgattgtgccgccgttcat 699  Q
    |||||||||||||||||||||||||  ||| |||||| | |||| |||||||| |||||||||||| ||||| | |||||||||||    
T  26339945 tactcactctcttttcagcttccctcggaatctcttcctctcccctctcatcaccgccaacaatcgtcgattattccgccgttcat 26339860  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 431 - 496
Target Start/End: Complemental strand, 46513660 - 46513595
Alignment:
Q  431 caggtatgctccatttaccaccagctccatttaccccatttagggccttggatgagtgacacgtgg 496  Q
    ||||||||||| |||||||| |||||| |||||||| |||||||| ||||||||| ||||||||||    
T  46513660 caggtatgctcgatttaccatcagctctatttacccaatttagggacttggatgaatgacacgtgg 46513595  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 454 - 496
Target Start/End: Original strand, 46164427 - 46164469
Alignment:
Q  454 gctccatttaccccatttagggccttggatgagtgacacgtgg 496  Q
    |||||||||||||||||||||| ||||||||||||||| ||||    
T  46164427 gctccatttaccccatttagggtcttggatgagtgacatgtgg 46164469  T

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Target: chr1 (Bit Score: 115; Significance: 5e-58; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 573 - 703
Target Start/End: Original strand, 48986130 - 48986260
Alignment:
Q  573 aaacacgcgcttctcttctcttcttctttcatacgtgaacgttactcactctcttttcagcttcccttagaacctcttcgtttccctctcatcagcgcca 672  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48986130 aaacacgcgcttctcttctcttcttctttcatacgtgaacgttacccactctcttttcagcttcccttagaacctcttcgtttccctgtcatcagcgcca 48986229  T
Q  673 acaatcgccgattgtgccgccgttcatctca 703  Q
    |||| ||||||||||| ||||||||||||||    
T  48986230 acaaccgccgattgtgtcgccgttcatctca 48986260  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 425 - 496
Target Start/End: Complemental strand, 48991015 - 48990944
Alignment:
Q  425 tgagcgcaggtatgctccatttaccaccagctccatttaccccatttagggccttggatgagtgacacgtgg 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  48991015 tgagcgcaggtatgctccatttaccaccagctccatttaccccatttagggtcttggatgagtgacatgtgg 48990944  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 422 - 496
Target Start/End: Original strand, 48985980 - 48986054
Alignment:
Q  422 aaatgagcgcaggtatgctccatttaccaccagctccatttaccccatttagggccttggatgagtgacacgtgg 496  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||    
T  48985980 aaatgagcgcaggtatgctccatttaccaccagctccatttacctcatttagggtcttggatgagtgacatgtgg 48986054  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 426 - 489
Target Start/End: Complemental strand, 25492108 - 25492045
Alignment:
Q  426 gagcgcaggtatgctccatttaccaccagctccatttaccccatttagggccttggatgagtga 489  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||    
T  25492108 gagcgcaggtatgctccatttaccaccaactccatataccccatttagggtcttggatgagtga 25492045  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 433 - 496
Target Start/End: Original strand, 52432980 - 52433043
Alignment:
Q  433 ggtatgctccatttaccaccagctccatttaccccatttagggccttggatgagtgacacgtgg 496  Q
    |||||||||||||||||| |||||  ||||||||||||||||| ||||||||| ||||||||||    
T  52432980 ggtatgctccatttaccatcagctttatttaccccatttagggtcttggatgaatgacacgtgg 52433043  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 454 - 496
Target Start/End: Complemental strand, 19880814 - 19880772
Alignment:
Q  454 gctccatttaccccatttagggccttggatgagtgacacgtgg 496  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||    
T  19880814 gctccatttaccccatttagggtcttggatgactgacaagtgg 19880772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 496
Target Start/End: Original strand, 8740448 - 8740511
Alignment:
Q  433 ggtatgctccatttaccaccagctccatttaccccatttagggccttggatgagtgacacgtgg 496  Q
    ||||||||| ||||||||   ||||||||||||||||||||||  |||||||| ||||| ||||    
T  8740448 ggtatgctcaatttaccatatgctccatttaccccatttagggtattggatgaatgacatgtgg 8740511  T

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