View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_200 (Length: 249)
Name: NF1271_low_200
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_200 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 24709425 - 24709206
Alignment:
| Q |
30 |
aagaaatcattcacctctttctcccaatcagtgcgtattgtaatgattgttagagaaaatacttgaacaatgagtgcacatatgatccccagatacagtc |
129 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
24709425 |
aagaaatccttcacctctttctcccaatcagtgcgtactgtaatgattgttagagaaaatacttgaacaatgagtgcacatatgaaccccagatatagtc |
24709326 |
T |
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| Q |
130 |
cctacattataagcattattattagcatgttgaaccatatcatatgttagcaattttttgaaaaactggaaaacatttatttaccttcccaccaatatgc |
229 |
Q |
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||||||||| || ||||||||||||||||||||||| |||||| |||||||||||||| |||||| ||| ||||||||||||||||||||||||||||| |
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| T |
24709325 |
cctacattagaaatattattattagcatgttgaaccaaatcataagttagcaatttttttaaaaaccggacaacatttatttaccttcccaccaatatgc |
24709226 |
T |
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| Q |
230 |
aatgcaaaagctaatacaac |
249 |
Q |
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||| | |||||||||||||| |
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| T |
24709225 |
aatacgaaagctaatacaac |
24709206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 30 - 249
Target Start/End: Original strand, 30510152 - 30510379
Alignment:
| Q |
30 |
aagaaatcattcacctctttctcccaatcagtgcgtattgtaatgattgttagagaaaatacttgaacaatgagtgcacatatgatccccagatacagtc |
129 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| | ||||||||||||||||||||| |||||| |
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| T |
30510152 |
aagaaattattcacctctttctcccaatcagtgcgtattgtaatgatcgttagagaaactacttgaacgaagagtgcacatatgatccccagccacagtc |
30510251 |
T |
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| Q |
130 |
cctacattataagcattattattagcatgttgaaccatatcatatg-------ttagcaatttttt-gaaaaactggaaaacatttatttaccttcccac |
221 |
Q |
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| T |
30510252 |
cctgaattataagtattattattagcatgttgaaccaaatcatatgttagcatttagcaattttttcaaaaaaatgaacaacatttatttaccttcccgc |
30510351 |
T |
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| Q |
222 |
caatatgcaatgcaaaagctaatacaac |
249 |
Q |
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||| ||||||| |||||||||||||||| |
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| T |
30510352 |
caacatgcaatacaaaagctaatacaac |
30510379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 30500931 - 30501033
Alignment:
| Q |
39 |
ttcacctctttctcccaatcagtgcgtattgtaatgattgttagagaaaatacttgaacaatgagtgcacatatgatccccagatacagtccctacatta |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| ||| ||| ||||||||||| |||||||| |||||||| |||| |||||||||| |
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| T |
30500931 |
ttcacctctttctcccaatcagtgcgtattgtaatgatcgttagacaaagtacgtgaacaatgagggcacatataatccccagccacagcccctacatta |
30501030 |
T |
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| Q |
139 |
taa |
141 |
Q |
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||| |
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| T |
30501031 |
taa |
30501033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 30468208 - 30468284
Alignment:
| Q |
42 |
acctctttctcccaatcagtgcgtattgtaatgattgttagagaaaatacttgaacaatgagtgcacatatgatccc |
118 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||||||||||||||||| |
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| T |
30468208 |
acctctttctcccaatcagtgcgtaatgtaatgatcattagagaaaaggcttgagcaatgagtgcacatatgatccc |
30468284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 30482591 - 30482736
Alignment:
| Q |
39 |
ttcacctctttctcccaatcagtgcgtattgtaatgattgttagagaaaatacttgaacaatgagtgcacatatgatccccagatacagtccctacatta |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| ||||| |||||||| ||||||| ||| |||||||||| |
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| T |
30482591 |
ttcacctctttctcccaatcagtgcgtattgtaatgatcattagacaaagcgcttgaacgatgagggcacatataatccccaaccacaacccctacatta |
30482690 |
T |
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| Q |
139 |
taagcattattattagcatgttgaaccatatcatatgttagcaatttt |
186 |
Q |
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||| || ||||||| | ||||||||| |||||||| | |||||||| |
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| T |
30482691 |
taa--atatttattagtaggttgaaccaaatcatatgatcgcaatttt |
30482736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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