View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_201 (Length: 248)
Name: NF1271_low_201
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_201 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 25105649 - 25105430
Alignment:
| Q |
1 |
ctaaaagtaattaaagatattctatacggtgattggactgtcagtcaacacggtgtgagttcatataccatcaactccctacaacaaatgacatctagtt |
100 |
Q |
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| T |
25105649 |
ctaaaactaattaaagatatcctatacggtgattggaccgtcagtcaacagagtgcaggttcatataccatcaactccctacagcaaatgacatctagct |
25105550 |
T |
|
| Q |
101 |
aaacgactctttcgagccacacaatccattaatggtggatcgaactaacgtatgaatcgttttcaaacacaaaaacaatccaagatctatcaactctttg |
200 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| | | |||||||||||||||||||||||||||||||||| |
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| T |
25105549 |
aaacgactctttcgagccacacgatccatcaatggtggatcgaactgacgtatgaatcgtctgccgacacaaaaacaatccaagatctatcaactctttg |
25105450 |
T |
|
| Q |
201 |
taatacaacaacaagttata |
220 |
Q |
| |
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||| ||||||| |||||||| |
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| T |
25105449 |
taaaacaacaagaagttata |
25105430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 7620571 - 7620657
Alignment:
| Q |
1 |
ctaaaagtaattaaagatattctatacggtgattggactgtcagtcaacacggtgtgagttcatataccatcaactccctacaacaa |
87 |
Q |
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| T |
7620571 |
ctaaaactaattgaaggtcttctatgcgatgattgaaccctctgtcaacacggaggcagttcatgtaccatcaactccctacaacaa |
7620657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 36392355 - 36392415
Alignment:
| Q |
68 |
ccatcaactccctacaacaaatgacatctagttaaacgactctttcgagccacacaatcca |
128 |
Q |
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| T |
36392355 |
ccatcaactccctgcagcaaatggcagcaagctaaacgaccctttcgagtcacacaatcca |
36392415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 33440478 - 33440352
Alignment:
| Q |
1 |
ctaaaagtaattaaagatattctatacggtgattggactgtcagtcaacacggtgtgagttcatataccatcaactccctacaacaaatgacatctagtt |
100 |
Q |
| |
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|||||| ||| ||||| | ||| || ||||||||| || || |||||||||| | |||||| |||| ||||||||||||||||| | || | |||| |
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| T |
33440478 |
ctaaaactaactaaaggtcttcgatgcggtgattgaaccctctgtcaacacggaggcggttcatgtaccttcaactccctacaacaatag-cagcaagtt |
33440380 |
T |
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| Q |
101 |
aaacgactctttcgagccacacaatcca |
128 |
Q |
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||||||| |||||||||| ||||||||| |
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| T |
33440379 |
aaacgaccctttcgagccgcacaatcca |
33440352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 128
Target Start/End: Complemental strand, 27287102 - 27287002
Alignment:
| Q |
27 |
cggtgattggactgtcagtcaacacggtgtgagttcatataccatcaactccctacaacaaatgacatctagttaaacgactctttcgagccacacaatc |
126 |
Q |
| |
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||||||||| || ||||||||||||| | |||||| |||||||| |||||| |||| |||| |||| | ||||||||| |||||||||| |||| || |
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| T |
27287102 |
cggtgattgaaccctcagtcaacacggaggtggttcatgtaccatcagctccctgcaac-aatggcatcaatttaaacgaccctttcgagcctcacagtc |
27287004 |
T |
|
| Q |
127 |
ca |
128 |
Q |
| |
|
|| |
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|
| T |
27287003 |
ca |
27287002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 17197718 - 17197790
Alignment:
| Q |
148 |
acgtatgaatcgttttcaaacacaaaaacaatccaagatctatcaactctttgtaatacaacaacaagttata |
220 |
Q |
| |
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||||||||||||| | | |||| | ||||||||||||||| |||||||| || || ||||||||||| |||| |
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|
| T |
17197718 |
acgtatgaatcgtctgccaacatagaaacaatccaagatccatcaactccctgcaaaacaacaacaagctata |
17197790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 32269917 - 32269857
Alignment:
| Q |
66 |
taccatcaactccctacaacaaatgacatctagttaaacgactctttcgagccacacaatc |
126 |
Q |
| |
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|||||| |||||||||||| ||||||| | || |||||| |||||||||||| ||||||| |
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| T |
32269917 |
taccattaactccctacaaaaaatgacgacaagctaaacggctctttcgagccccacaatc |
32269857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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