View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_207 (Length: 242)
Name: NF1271_low_207
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_207 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 3899160 - 3898933
Alignment:
| Q |
1 |
acaaacatatatgtattatgaaagttgagaaacataaattcacagcattataatataataccgattgattaatgccttaattcatcattttttacattaa |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3899160 |
acaaacatatctgtattatgaaagttgagaaacataaattcacagcattataatataataccgattgattaatgccttaattcattattttttacattaa |
3899061 |
T |
|
| Q |
101 |
atatcccttactccttcccagccacgacattcttggccgcgtccaatgctccttccaccgcctcctttgcctgatctcctgcattcttcagagcctctgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3899060 |
-tatcccttactccttcccagccacgacattcttggccgcgtccaatgctccttccaccgcctcctttgcctgatctcctgcattcttcagagcctctgt |
3898962 |
T |
|
| Q |
201 |
cgctgacccagcagcctcctgtgtgttct |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3898961 |
cgctgacccagcagcctcctgtgtgttct |
3898933 |
T |
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