View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_212 (Length: 235)
Name: NF1271_low_212
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_212 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 53657517 - 53657376
Alignment:
| Q |
1 |
tctaggccgggtttctgcataagcttttcgtgaagcgtaacgaatagtcttctcgaattttcggttcttccttttctctctgtacctcataaccctcgct |
100 |
Q |
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| T |
53657517 |
tctaggccgggtttctgcataagcttttcgtgaagcgtaacgaatagtcttctcgaattttcggttcttccttttctctctgtacctcataaccctcgct |
53657418 |
T |
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| Q |
101 |
tcacgatccattccacataattgtgttgctccttgcacccct |
142 |
Q |
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| T |
53657417 |
tcacgatccattccacataattgtgttgctccttgcacccct |
53657376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 42 - 142
Target Start/End: Complemental strand, 29430561 - 29430461
Alignment:
| Q |
42 |
gaatagtcttctcgaattttcggttcttccttttctctctgtacctcataaccctcgcttcacgatccattccacataattgtgttgctccttgcacccc |
141 |
Q |
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| T |
29430561 |
gaatagtcttctcgaattttcagttcttcctcttctctctgtacctcataaccctcgcttcacgatccattccacataattgtgttgctccttgcacccc |
29430462 |
T |
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| Q |
142 |
t |
142 |
Q |
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| T |
29430461 |
t |
29430461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 48759575 - 48759467
Alignment:
| Q |
2 |
ctaggccgggtttctgcataagcttttcgtgaagcgtaacgaatagtcttctcgaattttcggttcttccttttctctctgtacctcataaccctcgctt |
101 |
Q |
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| T |
48759575 |
ctaggcctagtttccgcataagctttacgagaagcataacgaattgtcttctcgaatcttcgattcttcctcttctccctgtacctcataaccctagctt |
48759476 |
T |
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| Q |
102 |
cacgatcca |
110 |
Q |
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| T |
48759475 |
cacgatcca |
48759467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 3419944 - 3420035
Alignment:
| Q |
11 |
gtttctgcataagcttttcgtgaagcgtaacgaatagtcttctcgaattttcggttcttccttttctctctgtacctcataaccctcgcttc |
102 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||| ||| ||||| || ||||||||||||||||||||||| ||||| |
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| T |
3419944 |
gtttctgcataagcttttctcgaagcgtagcgaatagtcttctcgaatcttctattctttctcttctctctgtacctcataaccctagcttc |
3420035 |
T |
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