View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1271_low_213 (Length: 235)
Name: NF1271_low_213
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_213 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 53657517 - 53657375
Alignment:
| Q |
1 |
tctaggccgggtttctgcataagcttttcgtgaagcgtaacgaatagtcttctcgaattttcggttcttccttttctctctgtacctcataaccctcgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53657517 |
tctaggccgggtttctgcataagcttttcgtgaagcgtaacgaatagtcttctcgaattttcggttcttccttttctctctgtacctcataaccctcgct |
53657418 |
T |
|
| Q |
101 |
tcacgatccattccacataattgtgttgctccttgcacccctt |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53657417 |
tcacgatccattccacataattgtgttgctccttgcacccctt |
53657375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 42 - 143
Target Start/End: Complemental strand, 29430561 - 29430460
Alignment:
| Q |
42 |
gaatagtcttctcgaattttcggttcttccttttctctctgtacctcataaccctcgcttcacgatccattccacataattgtgttgctccttgcacccc |
141 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29430561 |
gaatagtcttctcgaattttcagttcttcctcttctctctgtacctcataaccctcgcttcacgatccattccacataattgtgttgctccttgcacccc |
29430462 |
T |
|
| Q |
142 |
tt |
143 |
Q |
| |
|
|| |
|
|
| T |
29430461 |
tt |
29430460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 48759575 - 48759467
Alignment:
| Q |
2 |
ctaggccgggtttctgcataagcttttcgtgaagcgtaacgaatagtcttctcgaattttcggttcttccttttctctctgtacctcataaccctcgctt |
101 |
Q |
| |
|
||||||| ||||| ||||||||||| || ||||| |||||||| |||||||||||| |||| |||||||| ||||| ||||||||||||||||| |||| |
|
|
| T |
48759575 |
ctaggcctagtttccgcataagctttacgagaagcataacgaattgtcttctcgaatcttcgattcttcctcttctccctgtacctcataaccctagctt |
48759476 |
T |
|
| Q |
102 |
cacgatcca |
110 |
Q |
| |
|
||||||||| |
|
|
| T |
48759475 |
cacgatcca |
48759467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 3419944 - 3420035
Alignment:
| Q |
11 |
gtttctgcataagcttttcgtgaagcgtaacgaatagtcttctcgaattttcggttcttccttttctctctgtacctcataaccctcgcttc |
102 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||| ||| ||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
3419944 |
gtttctgcataagcttttctcgaagcgtagcgaatagtcttctcgaatcttctattctttctcttctctctgtacctcataaccctagcttc |
3420035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University