View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_218 (Length: 222)
Name: NF1271_low_218
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_218 |
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Alignment Details
Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 17071960 - 17072026
Alignment:
| Q |
10 |
gacacaaaaaactttggtttaaatttgagggaaatacattttaactt-ttgcttatattattattaa |
75 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
17071960 |
gacacaaaaaactttggtttaaatttgagggaaatacattttaacttgttgcttatattataattaa |
17072026 |
T |
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Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 17576313 - 17576247
Alignment:
| Q |
10 |
gacacaaaaaactttggtttaaatttgagggaaatacattttaactt-ttgcttatattattattaa |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
17576313 |
gacacaaaaaactttggtttaaatttgagggaaatacattttaacttgttgcttatattataattaa |
17576247 |
T |
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