View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_221 (Length: 219)
Name: NF1271_low_221
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_221 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 22255823 - 22255683
Alignment:
| Q |
1 |
agaggcttgaattggacatgcaatagaggttaaagttattgatggtgatgtaggttaattgtaggttttaaaatctgaggttgaagacaatgcaaagaaa |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22255823 |
agaggctcaaattggacatgcaatagaggttaaagttattgatggtggtgtaggttaattgcaggttttaaaatctgaggttgaagacaatgcaaagaaa |
22255724 |
T |
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| Q |
101 |
taatatagtaatgacagaccatcataaaatctctgctcctc |
141 |
Q |
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||||||| |||||||||||||||||||||| | |||||||| |
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| T |
22255723 |
taatataataatgacagaccatcataaaatatgtgctcctc |
22255683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 38150682 - 38150822
Alignment:
| Q |
1 |
agaggcttgaattggacatgcaatagaggttaaagttattgatggtgatgtaggttaattgtaggttttaaaatctgaggttgaagacaatgcaaagaaa |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38150682 |
agaggctcgaattggacatgcaatagaggttaaagttattgatggtggtgtagattaattgctggttttaaaatctgaggttgaagacaatgcaaagaaa |
38150781 |
T |
|
| Q |
101 |
taatatagtaatgacagaccatcataaaatctctgctcctc |
141 |
Q |
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| T |
38150782 |
taatatagtaatggcagaccatcataaaatctgtgctcctc |
38150822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 5433530 - 5433671
Alignment:
| Q |
1 |
agaggcttgaattggacatgcaatagaggttaaagttattgatggtgatgtaggttaattgtaggttttaaaatctgaggttgaagac-aatgcaaagaa |
99 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| ||||||||||| |
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| T |
5433530 |
agaggctcgaattggacatgcaatagaggttaaagttattgatggtggtgtaggttaattgcacgttttaaaatctgaggttgaagacaaatgcaaagaa |
5433629 |
T |
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| Q |
100 |
ataatatagtaatgacagaccatcataaaatctctgctcctc |
141 |
Q |
| |
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||||||||||||||||||||||||||||||| | |||||||| |
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| T |
5433630 |
ataatatagtaatgacagaccatcataaaatatgtgctcctc |
5433671 |
T |
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