View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_23 (Length: 539)

Name: NF1271_low_23
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_23
NF1271_low_23
[»] chr2 (4 HSPs)
chr2 (97-219)||(17493058-17493180)
chr2 (316-389)||(17492888-17492962)
chr2 (486-526)||(17492751-17492791)
chr2 (119-214)||(42816936-42817031)
[»] chr4 (2 HSPs)
chr4 (316-379)||(52368787-52368850)
chr4 (119-213)||(52368578-52368672)
[»] chr8 (2 HSPs)
chr8 (119-214)||(6005203-6005298)
chr8 (316-365)||(6005395-6005444)


Alignment Details
Target: chr2 (Bit Score: 123; Significance: 6e-63; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 97 - 219
Target Start/End: Complemental strand, 17493180 - 17493058
Alignment:
Q  97 taggtaccataggataaaaagcttaccaatagaaaaatggttgagtactttggctatcaaaccaaatatcataatataagtgcaaattgtgtccatagcg 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17493180 taggtaccataggataaaaagcttaccaatagaaaaatggttgagtactttggctatcaaaccaaatatcataatataagtgcaaattgtgtccatagcg 17493081  T
Q  197 atgacgtgggtcaatctgtgggg 219  Q
    |||||||||||||||||||||||    
T  17493080 atgacgtgggtcaatctgtgggg 17493058  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 316 - 389
Target Start/End: Complemental strand, 17492962 - 17492888
Alignment:
Q  316 cttacagcttcaagccaatgttggagggctaatttttgtgctttgtcatccttggacaaacc-ttcccaacctgt 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17492962 cttacagcttcaagccaatgttggagggctaatttttgtgctttgtcatccttggacaaacctttcccaacctgt 17492888  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 486 - 526
Target Start/End: Complemental strand, 17492791 - 17492751
Alignment:
Q  486 gagtataccttagctgctctagttcttgcccttccccacct 526  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17492791 gagtataccttagctgctctagttcttgcccttccccacct 17492751  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 42816936 - 42817031
Alignment:
Q  119 ttaccaatagaaaaatggttgagtactttggctatcaaaccaaatatcataatataagtgcaaattgtgtccatagcgatgacgtgggtcaatctg 214  Q
    |||||| |||||||| ||||||| ||| || |  | |||||| | ||||||||| || |||| ||||||||||||||||||||| || ||||||||    
T  42816936 ttaccagtagaaaaagggttgagaactctgacacttaaaccatacatcataatagaaatgcagattgtgtccatagcgatgacgaggatcaatctg 42817031  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 52368787 - 52368850
Alignment:
Q  316 cttacagcttcaagccaatgttggagggctaatttttgtgctttgtcatccttggacaaacctt 379  Q
    ||||||||||||||||||||||| || |||||||||||||| || |||||||| || |||||||    
T  52368787 cttacagcttcaagccaatgttgaagtgctaatttttgtgccttttcatccttagataaacctt 52368850  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 213
Target Start/End: Original strand, 52368578 - 52368672
Alignment:
Q  119 ttaccaatagaaaaatggttgagtactttggctatcaaaccaaatatcataatataagtgcaaattgtgtccatagcgatgacgtgggtcaatct 213  Q
    |||||| |||||||||||||| || |||  ||| | |||||| ||||||||||| |  || | |||||||||||| |||||||| ||||||||||    
T  52368578 ttaccagtagaaaaatggttgtgtgcttaagcttttaaaccagatatcataatacatatgaagattgtgtccatatcgatgacgcgggtcaatct 52368672  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 6005203 - 6005298
Alignment:
Q  119 ttaccaatagaaaaatggttgagtactttggctatcaaaccaaatatcataatataagtgcaaattgtgtccatagcgatgacgtgggtcaatctg 214  Q
    |||||| |||||||| ||||| |  || |||||||  ||||||| || ||| || ||||| |||||||||||||| ||||||||||| ||||||||    
T  6005203 ttaccagtagaaaaaaggttgtgagctctggctatggaaccaaacattatagtacaagtgtaaattgtgtccatatcgatgacgtggatcaatctg 6005298  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 6005395 - 6005444
Alignment:
Q  316 cttacagcttcaagccaatgttggagggctaatttttgtgctttgtcatc 365  Q
    |||||||||||||||||||||   || ||||||||||||||||| |||||    
T  6005395 cttacagcttcaagccaatgtctaagagctaatttttgtgctttatcatc 6005444  T

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