View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_24 (Length: 534)
Name: NF1271_low_24
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 106 - 505
Target Start/End: Original strand, 15661937 - 15662336
Alignment:
| Q |
106 |
accacagagaaaactgtaaacatataaacaacggtatcggtaaaaatgcaagaacagaaataaaattaggaacccatttcaaaccatgataatatgttat |
205 |
Q |
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| T |
15661937 |
accacagagaaaactgtaaacatataaacaacggtatcggtaaaaatgcaagaacagaaataaaattaggaacccatttcaaaccatgataatatgttat |
15662036 |
T |
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| Q |
206 |
gtagaaagcactactaaatgctatcatcatgctgattatagacacaaacaatgccactagtccagatatcaacttcaaaggcagtgacttgagaaaatct |
305 |
Q |
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| T |
15662037 |
gtagaaagcactactaaatgctatcatcatgctgattatagacacaaacaatgccactagtccagatatcaacttcaaaggcagtgacttgagaaaatct |
15662136 |
T |
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| Q |
306 |
tgctccgcatatcgcgagataaggatggatagaaatatcaagattgaagttgaagacgagataagtgccatggagtcggataaagcaaatacgaggaatg |
405 |
Q |
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| T |
15662137 |
tgctccgcatatcgcgagataaggatggatagaaatatcaagattgaagttgaagacgagataagtgccatggagtcggataaagcaaatacgaggaatg |
15662236 |
T |
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| Q |
406 |
caggcttatctaaataattaggagattctgtgttatcattgtttccacctggtaagctaaatgcagctgaaaacactccagttgcaatgagagtcgaaac |
505 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
15662237 |
caggtttatctaaataattaggagattctttgttatcattgtttccacctggtaagctaaatgcagctgaaaacactccagttgcaattagagtcgaaac |
15662336 |
T |
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