View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_26 (Length: 528)

Name: NF1271_low_26
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_26
NF1271_low_26
[»] chr4 (6 HSPs)
chr4 (13-364)||(4348723-4349074)
chr4 (453-498)||(8085086-8085131)
chr4 (454-499)||(45288933-45288978)
chr4 (453-498)||(41548663-41548709)
chr4 (453-496)||(21357639-21357683)
chr4 (453-497)||(22457569-22457613)
[»] chr2 (5 HSPs)
chr2 (13-364)||(25744981-25745322)
chr2 (453-499)||(32062201-32062247)
chr2 (461-499)||(1855287-1855325)
chr2 (454-498)||(11914064-11914109)
chr2 (457-498)||(19383228-19383269)
[»] chr5 (2 HSPs)
chr5 (453-499)||(37500651-37500697)
chr5 (453-498)||(18932487-18932532)
[»] chr3 (6 HSPs)
chr3 (453-499)||(8410596-8410642)
chr3 (453-499)||(33149288-33149334)
chr3 (453-499)||(55349468-55349514)
chr3 (453-499)||(13279019-13279065)
chr3 (461-499)||(16867168-16867206)
chr3 (455-499)||(41286598-41286642)
[»] chr8 (7 HSPs)
chr8 (455-499)||(28722773-28722817)
chr8 (455-499)||(28730415-28730459)
chr8 (453-498)||(30591855-30591901)
chr8 (453-499)||(40674095-40674140)
chr8 (453-499)||(19384040-19384090)
chr8 (453-499)||(28715426-28715476)
chr8 (454-499)||(42578328-42578373)
[»] scaffold0048 (1 HSPs)
scaffold0048 (453-499)||(72500-72546)
[»] chr7 (5 HSPs)
chr7 (453-499)||(37571985-37572031)
chr7 (455-499)||(20948793-20948837)
chr7 (453-498)||(2130207-2130252)
chr7 (453-498)||(20539748-20539793)
chr7 (455-499)||(26642754-26642799)
[»] chr1 (5 HSPs)
chr1 (453-499)||(49534602-49534648)
chr1 (453-498)||(44699855-44699901)
chr1 (457-498)||(44773844-44773885)
chr1 (453-498)||(48187430-48187475)
chr1 (334-362)||(18928523-18928551)
[»] chr6 (5 HSPs)
chr6 (453-498)||(23303715-23303760)
chr6 (453-498)||(26629708-26629753)
chr6 (453-498)||(26735684-26735729)
chr6 (453-498)||(28301947-28301992)
chr6 (453-498)||(28510081-28510126)


Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 4349074 - 4348723
Alignment:
Q  13 aatatcccaaaagcgaagtgtctcatctcccccagatgaaaccacagttaaaccatctgaactctgcaagacataagagcattagtgtataacttgaaag 112  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4349074 aatatcccaaaagcgaagcgtctcatctcccccagatgaaaccacagttaaaccatctgaactctgcaagacataagagcattagtgtataacttgaaag 4348975  T
Q  113 aaataacccccttgttaaagtttaagtggtttcattcatgtttatatgttttaacatagttgaagttgatgtcacttgttgaaaacaatcccaagcaact 212  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4348974 aaataatccccttgttaaagtttaagtggtttcattcatgtttatatgttttaacatagttgaagttgatgtcacttgttgaaaacaatcccaagcaact 4348875  T
Q  213 atattagatgctcttgccaatgaatgattgtactcacattattacatgctttaaaaattcacattggatgattaatcgtctctcaatttaccactatact 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4348874 atattagatgctcttgccaatgaatgattgtactcacattattacatgctttaaaaattcacattggatgattaatcgtctctcgatttaccactatact 4348775  T
Q  313 ggtttaagtaattatgacttgaagcatacctgagaaagatggaggactctag 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4348774 ggtttaagtaattatgacttgaagcatacctgagaaagatggaggactctag 4348723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 8085086 - 8085131
Alignment:
Q  453 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatg 498  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||    
T  8085086 ccttccccttgtttgggagttaaaaaaccaacaaggaaaggagatg 8085131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 454 - 499
Target Start/End: Complemental strand, 45288978 - 45288933
Alignment:
Q  454 cttccccttgtttgggagttaagacaccaacaaggaaaggagatga 499  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||    
T  45288978 cttccccttgtttgggagttaaaacaccaacaaggaaatgagatga 45288933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 41548709 - 41548663
Alignment:
Q  453 ccttccccttgtttgggagtt-aagacaccaacaaggaaaggagatg 498  Q
    ||||||||||||||||||||| |||| |||||||| |||||||||||    
T  41548709 ccttccccttgtttgggagttaaagaaaccaacaaagaaaggagatg 41548663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 496
Target Start/End: Original strand, 21357639 - 21357683
Alignment:
Q  453 ccttccccttgtttgggagtt-aagacaccaacaaggaaaggaga 496  Q
    ||||||||||||||||||||| |||| |||||||| |||||||||    
T  21357639 ccttccccttgtttgggagttaaagaaaccaacaaagaaaggaga 21357683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 497
Target Start/End: Original strand, 22457569 - 22457613
Alignment:
Q  453 ccttccccttgtttgggagttaagacaccaacaaggaaaggagat 497  Q
    ||||||||||||||||||||||| |  |||| |||||||||||||    
T  22457569 ccttccccttgtttgggagttaaaaagccaataaggaaaggagat 22457613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 364
Target Start/End: Original strand, 25744981 - 25745322
Alignment:
Q  13 aatatcccaaaagcgaagtgtctcatctcccccagatgaaaccacagttaaaccatctgaactctgcaagacataagagcattagtgtataacttgaaag 112  Q
    |||||||||||||||||| ||||||||||| || | ||||||||| ||||| ||||||| |||||||||||||||||||||||||||||  ||||||| |    
T  25744981 aatatcccaaaagcgaagagtctcatctcctccggctgaaaccactgttaacccatctggactctgcaagacataagagcattagtgta--acttgaatg 25745078  T
Q  113 aaataacccccttgttaaagtttaagtggtttcattcatgtttatatgttttaacatagttgaagttgatgtcacttgttgaaaacaatcccaagcaact 212  Q
    |||||| | ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| || |        ||||||||||  ||||| ||    
T  25745079 aaataatcaccttgataaagtttaagtggtttgattcatgtttatatgttttaacaaagttgaagtttatat--------gaaaacaatctgaagcagct 25745170  T
Q  213 atattagatgctcttgccaatgaatgattgtactcacattattacatgctttaaaaattcacattggatgattaatcgtctctcaatttaccactatact 312  Q
    | ||||||||||||||||||||||||| ||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||| | |||||||||||||||    
T  25745171 aaattagatgctcttgccaatgaatgactgtactcgcattcttacatgctataaaaattcacattggacgattaatcgtctcacgatttaccactatact 25745270  T
Q  313 ggtttaagtaattatgacttgaagcatacctgagaaagatggaggactctag 364  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25745271 ggtttaagtaatgatgacttgaagcatacctgagaaagatggaggactctag 25745322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 32062247 - 32062201
Alignment:
Q  453 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatga 499  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||    
T  32062247 ccttccccttgtttgggagttaaaacaccaacaaggaaagaagatga 32062201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 499
Target Start/End: Original strand, 1855287 - 1855325
Alignment:
Q  461 ttgtttgggagttaagacaccaacaaggaaaggagatga 499  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  1855287 ttgtttgggagttaaaacaccaacaaggaaaggagatga 1855325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 454 - 498
Target Start/End: Complemental strand, 11914109 - 11914064
Alignment:
Q  454 cttccccttgtttgggagtt-aagacaccaacaaggaaaggagatg 498  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||    
T  11914109 cttccccttgtttgggagttaaagaaaccaacaaggaaaggagatg 11914064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 498
Target Start/End: Original strand, 19383228 - 19383269
Alignment:
Q  457 ccccttgtttgggagttaagacaccaacaaggaaaggagatg 498  Q
    ||||||||||||||||||| | ||||||||| ||||||||||    
T  19383228 ccccttgtttgggagttaaaaaaccaacaagaaaaggagatg 19383269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 453 - 499
Target Start/End: Original strand, 37500651 - 37500697
Alignment:
Q  453 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatga 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  37500651 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatga 37500697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 18932532 - 18932487
Alignment:
Q  453 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatg 498  Q
    ||||||||||||||||||||||| |  |||| ||||||||||||||    
T  18932532 ccttccccttgtttgggagttaaaaagccaataaggaaaggagatg 18932487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 8410642 - 8410596
Alignment:
Q  453 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatga 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8410642 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatga 8410596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 453 - 499
Target Start/End: Original strand, 33149288 - 33149334
Alignment:
Q  453 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatga 499  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||    
T  33149288 ccttccccttgtttgggagttaaaacaccaataaggaaaggagatga 33149334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 55349514 - 55349468
Alignment:
Q  453 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatga 499  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||    
T  55349514 ccttccccttgtttgagagttaaaacaccaacaaggaaaggagatga 55349468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 13279065 - 13279019
Alignment:
Q  453 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatga 499  Q
    ||||||||||||||||||||||| |  ||||||||||||||||||||    
T  13279065 ccttccccttgtttgggagttaaaaagccaacaaggaaaggagatga 13279019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 499
Target Start/End: Complemental strand, 16867206 - 16867168
Alignment:
Q  461 ttgtttgggagttaagacaccaacaaggaaaggagatga 499  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  16867206 ttgtttgggagttaaaacaccaacaaggaaagaagatga 16867168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 455 - 499
Target Start/End: Complemental strand, 41286642 - 41286598
Alignment:
Q  455 ttccccttgtttgggagttaagacaccaacaaggaaaggagatga 499  Q
    |||||||||||| |||||| | | |||||||||||||||||||||    
T  41286642 ttccccttgtttaggagttcaaaaaccaacaaggaaaggagatga 41286598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 455 - 499
Target Start/End: Complemental strand, 28722817 - 28722773
Alignment:
Q  455 ttccccttgtttgggagttaagacaccaacaaggaaaggagatga 499  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  28722817 ttccccttgtttgggagttaaaacaccaacaaggaaaggagatga 28722773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 455 - 499
Target Start/End: Complemental strand, 28730459 - 28730415
Alignment:
Q  455 ttccccttgtttgggagttaagacaccaacaaggaaaggagatga 499  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  28730459 ttccccttgtttgggagttaaaacaccaacaaggaaaggagatga 28730415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 30591855 - 30591901
Alignment:
Q  453 ccttccccttgtttgggagtt-aagacaccaacaaggaaaggagatg 498  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||    
T  30591855 ccttccccttgtttgggagttaaagaaaccaacaaggaaaggagatg 30591901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 40674140 - 40674095
Alignment:
Q  453 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatga 499  Q
    ||||||||||||||||||||||| | |||||| ||||||||||||||    
T  40674140 ccttccccttgtttgggagttaaaaaaccaac-aggaaaggagatga 40674095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 19384090 - 19384040
Alignment:
Q  453 ccttccccttgtttgggagttaag----acaccaacaaggaaaggagatga 499  Q
    |||||||||||||||||||||||     |||||||||||||||||||||||    
T  19384090 ccttccccttgtttgggagttaattaaaacaccaacaaggaaaggagatga 19384040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 28715476 - 28715426
Alignment:
Q  453 ccttccccttgtttgggagttaag----acaccaacaaggaaaggagatga 499  Q
    |||||||||||||||||||||||     |||||||||||||||||||||||    
T  28715476 ccttccccttgtttgggagttaattaaaacaccaacaaggaaaggagatga 28715426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 499
Target Start/End: Complemental strand, 42578373 - 42578328
Alignment:
Q  454 cttccccttgtttgggagttaagacaccaacaaggaaaggagatga 499  Q
    |||||||||||||||||||||| | || |||||||||| |||||||    
T  42578373 cttccccttgtttgggagttaataaactaacaaggaaatgagatga 42578328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 453 - 499
Target Start/End: Original strand, 72500 - 72546
Alignment:
Q  453 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatga 499  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||    
T  72500 ccttccccttgtttgggagttaaaaaaccaacaaggaaaggagatga 72546  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 37572031 - 37571985
Alignment:
Q  453 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatga 499  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||    
T  37572031 ccttccccttgtttgggagttaaaacaccaacaaggaaagaagatga 37571985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 455 - 499
Target Start/End: Complemental strand, 20948837 - 20948793
Alignment:
Q  455 ttccccttgtttgggagttaagacaccaacaaggaaaggagatga 499  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||    
T  20948837 ttccccttgtttgggagttaaaacaccgacaaggaaaggagatga 20948793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 2130207 - 2130252
Alignment:
Q  453 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatg 498  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||    
T  2130207 ccttccccttgtttgggagttaaaaagccaacaaggaaaggagatg 2130252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 20539793 - 20539748
Alignment:
Q  453 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatg 498  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||    
T  20539793 ccttccccttgtttgggagttaaaaagccaacaaggaaaggagatg 20539748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 455 - 499
Target Start/End: Complemental strand, 26642799 - 26642754
Alignment:
Q  455 ttccccttgtttgggagttaa-gacaccaacaaggaaaggagatga 499  Q
    ||||||||||||||||||||| || |||||||||||||||||||||    
T  26642799 ttccccttgtttgggagttaaagaaaccaacaaggaaaggagatga 26642754  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 453 - 499
Target Start/End: Original strand, 49534602 - 49534648
Alignment:
Q  453 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatga 499  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||    
T  49534602 ccttccccttgtttgggagttaaaacaccaacaaggaaatgagatga 49534648  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 44699855 - 44699901
Alignment:
Q  453 ccttccccttgtttgggagtt-aagacaccaacaaggaaaggagatg 498  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||    
T  44699855 ccttccccttgtttgggagttaaagaaaccaacaaggaaaggagatg 44699901  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 457 - 498
Target Start/End: Complemental strand, 44773885 - 44773844
Alignment:
Q  457 ccccttgtttgggagttaagacaccaacaaggaaaggagatg 498  Q
    ||||||||||||||||||| | ||||||||||||||||||||    
T  44773885 ccccttgtttgggagttaaaaaaccaacaaggaaaggagatg 44773844  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 48187475 - 48187430
Alignment:
Q  453 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatg 498  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||    
T  48187475 ccttccccttgtttgggagttaaaaagccaacaaggaaaggagatg 48187430  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 362
Target Start/End: Original strand, 18928523 - 18928551
Alignment:
Q  334 aagcatacctgagaaagatggaggactct 362  Q
    |||||||||||||||||||||||||||||    
T  18928523 aagcatacctgagaaagatggaggactct 18928551  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 23303715 - 23303760
Alignment:
Q  453 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatg 498  Q
    ||||||||||||||| ||||||| |  |||||||||||||||||||    
T  23303715 ccttccccttgtttgagagttaaaaagccaacaaggaaaggagatg 23303760  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 26629708 - 26629753
Alignment:
Q  453 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatg 498  Q
    ||||||||||||||||||||||| |  |||| ||||||||||||||    
T  26629708 ccttccccttgtttgggagttaaaaagccaataaggaaaggagatg 26629753  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 26735684 - 26735729
Alignment:
Q  453 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatg 498  Q
    ||||||||||||||||||||||| |  |||| ||||||||||||||    
T  26735684 ccttccccttgtttgggagttaaaaagccaataaggaaaggagatg 26735729  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 28301947 - 28301992
Alignment:
Q  453 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatg 498  Q
    ||||||||||||||||||||||| |  |||| ||||||||||||||    
T  28301947 ccttccccttgtttgggagttaaaaagccaataaggaaaggagatg 28301992  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 28510126 - 28510081
Alignment:
Q  453 ccttccccttgtttgggagttaagacaccaacaaggaaaggagatg 498  Q
    ||||||||||||||||||||||| |  |||| ||||||||||||||    
T  28510126 ccttccccttgtttgggagttaaaaagccaataaggaaaggagatg 28510081  T

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