View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_28 (Length: 525)
Name: NF1271_low_28
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 59 - 518
Target Start/End: Complemental strand, 53309380 - 53308916
Alignment:
| Q |
59 |
caagcaaattaaatagctcataataattaattaaggaagagagaaatttatata----attgagagatgaacaagatcgatgcttacttccaggtaagat |
154 |
Q |
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| T |
53309380 |
caagcaaattaaatagctcataataattaattaaggaagagagaaatttatatatataattgagagatgaacaagatcgatgcttacttccaggtaagat |
53309281 |
T |
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| Q |
155 |
caccagcaagaagaagatcattctccatgtcttcataggcaataacatgaccaggaatggcattagaaagatcaagatgatgatcaccggcgtcgcagtc |
254 |
Q |
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| T |
53309280 |
caccagcaagaagaagatcattctccatgtcttcataggcaataacatgaccaggaatggcattagaaagatcaagatgatgatcaccggcgtcgcagtc |
53309181 |
T |
|
| Q |
255 |
atccgtgcaatcgacaaacatctggcggagagccttggccagactttggtagctaccgtggttgtgaaggctgatgcgttggcagatcgaacggccctcc |
354 |
Q |
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| T |
53309180 |
atccgtgcaatcgacaaacatctggcggagagccttggccagactttggtagctaccgtggttgtgaaggctgatgcgttggcagatcgaacggccctcc |
53309081 |
T |
|
| Q |
355 |
aacacaactgtcacagcaggaactacactactagagacaagatcatcatccagctcaagcccatgtgagagtgtttgaagtttgttgtacttggtt-ttt |
453 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
53309080 |
aacacaactgtcacagcaggaactacactactagagacaagatcatcatccagctcaagcccatgtgagagtgtttgaagtttgttgtacttggtttttt |
53308981 |
T |
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| Q |
454 |
tattattactggcataaaaattagccaaagatgaagaactagttgaagatgatgcacctatgata |
518 |
Q |
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| T |
53308980 |
tattattactggcatagaaattagccaaagatgaagaactagttgaagatgatgcacctatgata |
53308916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 53309423 - 53309389
Alignment:
| Q |
30 |
agtttttcatttagaagctatatttttctcaagca |
64 |
Q |
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| T |
53309423 |
agtttttcatttagaagctatatttttctcaagca |
53309389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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