View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_29 (Length: 523)
Name: NF1271_low_29
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 16 - 470
Target Start/End: Complemental strand, 45142369 - 45141915
Alignment:
| Q |
16 |
acacaaaataaaagattacagaaagtaaagatgaaaacacgatgtttggatcaatttgaatcctacatcctcactgaggtcgatctcatcactatgatca |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45142369 |
acacaaaataaaagattacagaaagtaaagatgaaaacacgatgtttggatcaatttgaatcctacatcctcactgaggtcgatctcatcactatgatca |
45142270 |
T |
|
| Q |
116 |
agaattacaaggctttcctttctaatagtaggaacgcattccaaatttacaacaaacttagaaacagaatgtaggatatttatcacattccaaattggac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45142269 |
agaattacaaggctttcctttctaatagtaggaacgcattccaaatttacaacaaacttagaaacagaatgtaggatatttatcacattccaaattggac |
45142170 |
T |
|
| Q |
216 |
cgcttattttttaatagtagtaggaacacaactattaataacagagaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgat |
315 |
Q |
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| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45142169 |
cacttattttttaatagtagtaggcacacaactattaataacagaaaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgat |
45142070 |
T |
|
| Q |
316 |
gcaagaaagagagcagcttctgcaatatgcgtagcctttagtgtaattcctttcaaattagcagaatctttcatattagcttcaacttcactcatctcca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45142069 |
gcaagaaagagagcagcttctgcaatatgcgtagcctttagtgtaattcctttcaaattagcagaatctttcatattagcttcaactttactcatctcca |
45141970 |
T |
|
| Q |
416 |
tattcagtgctctacatgcaagaggcgtggcaacaccattcggtgagattgaatt |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
45141969 |
tattcagtgctctacatgcaagaggcgtggcaacaccatacggtgagattgaatt |
45141915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 256 - 470
Target Start/End: Complemental strand, 45152774 - 45152560
Alignment:
| Q |
256 |
acagagaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtagccttta |
355 |
Q |
| |
|
|||| ||||||||||||||||||||| || ||||||||||||||||||||||| || || |||||||| | |||||||||||||||||| |||||||| |
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| T |
45152774 |
acagtgaagcctccatcgaccaccaagttttgtccactaatataagccgattcatcggaagcaagaaacatagcagcttctgcaatatgaccagccttta |
45152675 |
T |
|
| Q |
356 |
gtgtaattcctttcaaattagcagaatctttcatattagcttcaacttcactcatctccatattcagtgctctacatgcaagaggcgtggcaacaccatt |
455 |
Q |
| |
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|||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| | ||||||||||||||| |||||| |||||||||||| |
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| T |
45152674 |
gtgtaattcctttcaaattagcagaatcattcccaatagcttcaacttcactcacatccttgttcagtgctctacataaaagaggtgtggcaacaccaga |
45152575 |
T |
|
| Q |
456 |
cggtgagattgaatt |
470 |
Q |
| |
|
||||| |||||||| |
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| T |
45152574 |
aggtgaaattgaatt |
45152560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 250 - 470
Target Start/End: Complemental strand, 38256599 - 38256379
Alignment:
| Q |
250 |
ttaataacagagaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtag |
349 |
Q |
| |
|
||||| || |||||||||||||| || ||||| |||||||||||||||||||| ||||| || ||||||||||| | ||||| ||||||||||| | || |
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| T |
38256599 |
ttaatgactgagaagcctccatcaacgaccaagttgtgtccactaatataagcagattcatcagatgcaagaaacaaagcagtctctgcaatatgagcag |
38256500 |
T |
|
| Q |
350 |
cctttagtgtaattcctttcaaattagcagaatctttcatattagcttcaacttcactcatctccatattcagtgctctacatgcaagaggcgtggcaac |
449 |
Q |
| |
|
|||| | ||||||||| | |||||||||| |||| | |||||||||||||||| | |||| | ||||||||||||||||||||| || ||||| |
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| T |
38256499 |
ccttcaatgtaattccctgcaaattagcataatcaaggccaacagcttcaacttcactcggcaccatgtccagtgctctacatgcaagaggtgtagcaac |
38256400 |
T |
|
| Q |
450 |
accattcggtgagattgaatt |
470 |
Q |
| |
|
| ||| |||||||||||||| |
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|
| T |
38256399 |
agcatagggtgagattgaatt |
38256379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 34530943 - 34530995
Alignment:
| Q |
55 |
cgatgtttggatcaa-tttgaatcctacatcctcactgaggtcgatctcatca |
106 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||| ||||||||||||||||| |
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|
| T |
34530943 |
cgatatttggatcaactttgaatcctacatcctcgttgaggtcgatctcatca |
34530995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 353
Target Start/End: Original strand, 12700681 - 12700778
Alignment:
| Q |
256 |
acagagaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtagcctt |
353 |
Q |
| |
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|||||||| || ||||| || |||||||| || |||||||| ||| | | ||| || || |||||||| | ||| ||||||||||||||| ||||||| |
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| T |
12700681 |
acagagaaaccaccatcaactaccaaattatgaccactaatgtaaacagcttcatcagaagcaagaaacaaagctgcttctgcaatatgcttagcctt |
12700778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 117
Target Start/End: Original strand, 29361452 - 29361487
Alignment:
| Q |
82 |
atcctcactgaggtcgatctcatcactatgatcaag |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
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| T |
29361452 |
atcctcactgaggtcgatcccatcactatgatcaag |
29361487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 117
Target Start/End: Complemental strand, 30270658 - 30270623
Alignment:
| Q |
82 |
atcctcactgaggtcgatctcatcactatgatcaag |
117 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| |
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| T |
30270658 |
atcctcactgaggtcgatcccatcactatgatcaag |
30270623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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