View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_3 (Length: 694)
Name: NF1271_low_3
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 613; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 33 - 689
Target Start/End: Original strand, 14741577 - 14742232
Alignment:
| Q |
33 |
aggaggttatcaggagacaacttggggatggcattcgcaagtctggacttctcggaaagtgacaacttcctacaatattctcaacaacagaacataataa |
132 |
Q |
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| T |
14741577 |
aggaggttatcaggagacaacttggggatggcattcgcaagtctggacttctccgaaagtgacaacttcctacaatattctcaacaacagaacataataa |
14741676 |
T |
|
| Q |
133 |
acaacatagttccataacatgaccaaaaggaaatgcatcatgaattctcagtggcctatttagaggagcaaagttggtgctataaaatataacattgaat |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14741677 |
acaacatagttccataacatgaccaaaaggaaatgcatcatgaattctcagtggcctatttagaggagcaaagttggtgctataaaatataacattgaat |
14741776 |
T |
|
| Q |
233 |
agtaggttattcgatcttgatcagatgattcagatccatgagagcgtaagcgtgtcgatgatatcaaaatctattaaactcctaccatgtagcactatct |
332 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14741777 |
agtaagttattcgatcttgatcagataattcagatccatgagagcataagcgtgtcgatgatatcaaaatctattaaactcctaccatgtagcactattt |
14741876 |
T |
|
| Q |
333 |
tggcaatttgaacatgagactacaaaaatgaaaataatgggtgattctttcacgaacctgcactgtgcaatcattgttgttttgagacttctcaaagccg |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14741877 |
tggcaatttgaacatgagactacaaaaatgaaaataatgggtgattctttcacgaacctgcactgtgcaatcattgttgttttgagacttctcaaagccg |
14741976 |
T |
|
| Q |
433 |
tctcaacattggacagctgaagcaacaaaaattaaatgcataagttaatcttctgatatatttcttatgataaccatacaaatattaaatttaaacacaa |
532 |
Q |
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| T |
14741977 |
tctcaacattggacagctgaagcaacaaaaattaaatgcataagttaatcttctgatatatttcttatgataaccatac-aatattaaatttgaacacaa |
14742075 |
T |
|
| Q |
533 |
ctttgcaaaataaaaatgatgaaccaacctcagtacttaattctctagtcttgtttgcataagtggcttctagagcaagctttttactcatttgcttatg |
632 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14742076 |
ctttgcaaaataaaaatgatgaaccaacctcagtacttaattctctagtcttgtttgcataagtggcttctagagcaagcttattactcatttgcttatg |
14742175 |
T |
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| Q |
633 |
agcacgttgcagcggcttcttagatccagtcggagcattctcccagcctttgcttct |
689 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
14742176 |
agcacgttgcagcggcttcttagatccagtcggagcattctccctgcctttgtttct |
14742232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 341 - 632
Target Start/End: Original strand, 14734910 - 14735200
Alignment:
| Q |
341 |
tgaacatgagactacaaaaatgaaaataatgggtgattctttcacgaacctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaaca |
440 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||| | |||||||||||||||||||||||||| |||| |
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| T |
14734910 |
tgaacatgagaccacaaaaatgaaaataatgggtgattctttgacgaacctgtactgtgcaatgaccgttgttttgagacttctcaaagccgtatcaatc |
14735009 |
T |
|
| Q |
441 |
ttggacagctgaagcaacaaaaattaaatgcataagttaatcttctgatatatttcttatgataaccatacaaatattaaatttaaacacaactttgcaa |
540 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||| |
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| T |
14735010 |
ttggacaagtagagcaacaaaaattaaatgcataagttaatcttctgatatatttcttatgataaccatac-aatataaaatttaaacacaactctgcaa |
14735108 |
T |
|
| Q |
541 |
aataaaaatgatgaaccaacctcagtacttaattctctagtcttgtttgcataagtggcttctagagcaagctttttactcatttgcttatg |
632 |
Q |
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| T |
14735109 |
aacaaaaatgatgaaccaacctcagtacttaattctctagtcttgtttgcataagtggcttctagagcaagctttttactcaattgcttatg |
14735200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 373 - 468
Target Start/End: Complemental strand, 14998620 - 14998525
Alignment:
| Q |
373 |
gtgattctttcacgaacctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaa |
468 |
Q |
| |
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|||||| |||||| |||||||||| |||||| | |||||||||||||| |||||||| | |||| || |||||||| | |||||||| ||||| |
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| T |
14998620 |
gtgattttttcacaaacctgcactttgcaattgcttttgttttgagacttgtcaaagccatatcaatcttagacagctggaacaacaaaagttaaa |
14998525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 388 - 618
Target Start/End: Complemental strand, 29467453 - 29467226
Alignment:
| Q |
388 |
acctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaatgcataagttaatcttctg |
487 |
Q |
| |
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|||||||||||| |||| ||||||||||||||||||||||||| | ||||| || |||||||| | |||||||| ||||||||| || |||| | |||| |
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| T |
29467453 |
acctgcactgtgaaatcgctgttgttttgagacttctcaaagccatatcaaccttagacagctggaacaacaaaagttaaatgcacaaattaaccgtctg |
29467354 |
T |
|
| Q |
488 |
atatatttcttatgataaccatacaaatatta-aatttaaacacaactttgcaaaataaaaatgatgaaccaacctcagtacttaattctctagtcttgt |
586 |
Q |
| |
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| ||| ||||| | | ||||| | |||| | |||||||||| || || || |||||| |||||||||||||||| |||||||| |||||| | | |
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| T |
29467353 |
aaatacttcttccaagtaacatac-atcattagattttaaacacagctctg---aaaaaaaataatgaaccaacctcagtgcttaattccctagtcatat |
29467258 |
T |
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| Q |
587 |
ttgcataagtggcttctagagcaagcttttta |
618 |
Q |
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| T |
29467257 |
tggcataagttgcttcttgagcaagcctttta |
29467226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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