View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_30 (Length: 503)
Name: NF1271_low_30
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 11 - 386
Target Start/End: Complemental strand, 25545173 - 25544799
Alignment:
| Q |
11 |
cacagaaaaggaaccgaaggaatcaatggcataatccaactcaaccaaaatagattgggaaacaaactatgaaacatcaacaacatagatgcagaaatcg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25545173 |
cacagaaaaggaaccgaaggaatcaatggcataatccaactcaaccaaaatagattgggaaacaaactatgaaacatcaacaacatagatgcagaaatcg |
25545074 |
T |
|
| Q |
111 |
agaggctatactgctacgctatccaaaacttcaatgttttgactcaaagccaaaaccaacaagatattttctcatacacactgaagggttgcattataat |
210 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
25545073 |
agaggctatattgctacgctatccaaaacttcaatgttttgactcaaagccaaaaccaacaagatcttttctcatacacactgtagggttgcattataat |
25544974 |
T |
|
| Q |
211 |
aaaatatattgctaagtgattcataaccaatttttgctatactaaattgcattgcttattaggttgaactgcaacctcgtaaaattgagatttctaagag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25544973 |
aaaatatattgctaagtgattcataaccaatttttgctatactaaattgcattgtttattaggttgaactgcaacctcgtaaaattgagatttctaagag |
25544874 |
T |
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| Q |
311 |
tctcctttagaatttgatggcttttcctctccaattctgctgaaattaaaaacaggatttatgccaaaatcacaag |
386 |
Q |
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| T |
25544873 |
tctccttta-aatttgatggcttttcctctccaattctgctgaaattaaaaacaggatttatgccaaaatcacaag |
25544799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 383 - 474
Target Start/End: Complemental strand, 25544706 - 25544615
Alignment:
| Q |
383 |
caagaacagaaaagcataaaaacaataatttgtttttcagcacttattctttctcctaataaatcatgatctttattttacaatcacataga |
474 |
Q |
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| T |
25544706 |
caagaacagaaaagtattaaaacaataatttgtttttcagcacttattctttctcttaataaatcatgacctttattttacaatcacataga |
25544615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 1154569 - 1154844
Alignment:
| Q |
11 |
cacagaaaaggaaccgaaggaatcaatggcataatccaactcaaccaaaatagattgggaaacaaactatgaaacatcaacaacatagatgcagaaatcg |
110 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||| | |
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| T |
1154569 |
cacagaaaaggaaccgaaggaattaatggcataatccaacacaaccaaaatagattgggaaacaaactatgaactatgaacaacatagatgcagaaattg |
1154668 |
T |
|
| Q |
111 |
agaggctatactgctacgctatccaaaacttcaatgttttgactcaaagccaaaaccaacaagatattttctcatacacactgaagggttgcattataat |
210 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| || ||||||||||||||||||||||||||||||||||||| | |
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| T |
1154669 |
agaggctatattgctacgctatccaaaacttcaatgttttgactc--agccacaactaataagatattttctcatacacactgaagggttgcattatgct |
1154766 |
T |
|
| Q |
211 |
aaaatatattgctaagtgattcataaccaatttttgctatactaaattgcattgcttattaggttgaactgcaacctc |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1154767 |
aaaatatattgctaagtgattcataaccaatttttgctatgctaaattgcattgcttattaggttgaactgcaacctc |
1154844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 290 - 386
Target Start/End: Original strand, 1154907 - 1155003
Alignment:
| Q |
290 |
taaaattgagatttctaagagtctcctttagaatttgatggcttttcctctccaattctgctgaaattaaaaacaggatttatgccaaaatcacaag |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1154907 |
taaaattgagatttctaagagtctcctttagaatttgatggcttttcctctccaattctgctgaaattaaaaacaggaattatgccaaaatcacaag |
1155003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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