View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1271_low_31 (Length: 500)
Name: NF1271_low_31
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_31 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 96 - 487
Target Start/End: Original strand, 43938411 - 43938797
Alignment:
| Q |
96 |
tgataatggaaccgaacccaagaagaatttatgaaccacagagaaattgggtacctctctcttttcttttctttctaccaacatattatgaatattcatt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43938411 |
tgataatggaaccgaacccaagaagaatttatgaaccacagagaaattgggtacctttctcttttcttttctttctaccaacatattatgaatattcatt |
43938510 |
T |
|
| Q |
196 |
tcttgctctgttatatttccttttttatgatccatcatgatcatgtttagcagcaagtagtaaaatcaatagaaacnnnnnnnnnnctttctcactgctg |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43938511 |
tcttgctctgttatatttccttttttatgatccatcatgatcatgtttagcaccaagtagtaaaatcaatagaaactttttt-----tttctcactgctg |
43938605 |
T |
|
| Q |
296 |
caatgagtagtaagaaaggtttgatgattaccaataatttagaagaagcttcagtgaagttgttaaaccaatttgtgaaagtgaaggaaaattcacggat |
395 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43938606 |
ctatgagtagtaagaaaggtttgatgattcccaataatttggaagaagcttcagtgaagttgttaaaccaatttgtgaaagtgaaggaaaattcacggat |
43938705 |
T |
|
| Q |
396 |
tttgtactttcttattctcgttttcattgcttggtttattcacaaatggatcttctctttctccaattgccttccagttatccttcttctct |
487 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43938706 |
ttcttactttcttattctcgttttcattgcttggtttattcacaaatggatcttctctttctccaattgccttccagttatccttcttctct |
43938797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University