View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_32 (Length: 497)

Name: NF1271_low_32
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_32
NF1271_low_32
[»] chr5 (10 HSPs)
chr5 (104-493)||(17377526-17377921)
chr5 (104-260)||(17392604-17392766)
chr5 (257-460)||(17392793-17392997)
chr5 (104-260)||(17383894-17384055)
chr5 (180-229)||(32429428-32429477)
chr5 (257-299)||(17384082-17384124)
chr5 (179-233)||(20112218-20112272)
chr5 (193-239)||(19653644-19653690)
chr5 (104-149)||(17380109-17380154)
chr5 (306-411)||(17384143-17384248)
[»] chr1 (2 HSPs)
chr1 (327-460)||(26052557-26052689)
chr1 (104-215)||(26052742-26052859)
[»] chr6 (3 HSPs)
chr6 (179-228)||(3254895-3254944)
chr6 (183-242)||(14435590-14435649)
chr6 (196-233)||(14438258-14438295)
[»] scaffold1377 (1 HSPs)
scaffold1377 (181-233)||(1349-1401)
[»] chr2 (1 HSPs)
chr2 (261-299)||(15785027-15785065)
[»] scaffold0009 (1 HSPs)
scaffold0009 (113-150)||(40809-40846)
[»] chr3 (4 HSPs)
chr3 (179-227)||(2467536-2467584)
chr3 (174-222)||(32224417-32224465)
chr3 (259-295)||(32226939-32226975)
chr3 (259-295)||(32241577-32241613)


Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 104 - 493
Target Start/End: Original strand, 17377526 - 17377921
Alignment:
Q  104 ggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagttaaa----ct--agcttgcgaagctgatcttcaattcgcaaca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |    ||  |||||||||||||||| ||| ||||||||||    
T  17377526 ggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaactttaaagttataggctctgaagcttgcgaagctgattttcgattcgcaaca 17377625  T
Q  198 tatattttgcagaatgcgagacttttacaagttatgtccattgaccatagtcttcacccaaatttatcctcctgtccaaggatctctcccacatgtaagc 297  Q
    ||||||||||  |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17377626 tatattttgcgaaatgcgagacttttacaagttatgtccattcaccatagtcttcacgcaaatttatcctcctgtccaaggatctctcccacatgtaagc 17377725  T
Q  298 tgatttagtagttcctagatgtatgtctggtgttttcgttagtttcaatacttgcttctactgaatttgatggttttaacaatataggcttatataaatc 397  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17377726 tgattcagtagttcctagatgtatgtctggtgttttcgttagtttcaatacttgcttctactgaatttgatggttttaacaatataggcttatataaatc 17377825  T
Q  398 agtagtctgccaatactttcttctttgcattgttttgttagctcaaattttcgcgatgagccaagcatcctttgtttgtattgagaataatctacc 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  17377826 agtagtctgccaatactttcttctttgcattgttttgttagctcaaattttcgcgatgagccaagcatcctttgtttgtattgagcataatttacc 17377921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 104 - 260
Target Start/End: Original strand, 17392604 - 17392766
Alignment:
Q  104 ggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagttaaa--cta----gcttgcgaagctgatcttcaattcgcaaca 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||    ||||||||||||||| ||| ||||||||||    
T  17392604 ggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagttatagactatgaagcttgcgaagctgattttcgattcgcaaca 17392703  T
Q  198 tatattttgcagaatgcgagacttttacaagttatgtccattgaccatagtcttcacccaaat 260  Q
    |||||||||||||||||||||||||||||||||||| ||||| | |||| |||||||||||||    
T  17392704 tatattttgcagaatgcgagacttttacaagttatgaccattcatcatactcttcacccaaat 17392766  T

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Target: chr5; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 257 - 460
Target Start/End: Original strand, 17392793 - 17392997
Alignment:
Q  257 aaatttatcctcctgtccaaggatctctcccacatgtaagctgattt--agtagttcctagatgtatgtctggtgttttcgttagtttcaatacttgctt 354  Q
    ||||||||||||||||||||| || ||||||||||||||||||| |   || |||||||||||||||  |||||||||| ||||||||| ||| |  ||     
T  17392793 aaatttatcctcctgtccaagaatgtctcccacatgtaagctgaatctcagcagttcctagatgtatacctggtgtttttgttagtttcgatattcacta 17392892  T
Q  355 ctactgaatttgatggttttaacaatataggcttatataaatcagtagtctgccaatactttcttctttgcattgttttgttagctcaaattttcgcgat 454  Q
    ||||||||||||||||||| ||||||||||||||||  || ||| | || | ||||||||||| ||||||||||||||||||| ||| |||||||| |||    
T  17392893 ctactgaatttgatggtttgaacaatataggcttattcaagtcaatggttttccaatactttcatctttgcattgttttgttaactc-aattttcgtgat 17392991  T
Q  455 gagcca 460  Q
    ||||||    
T  17392992 gagcca 17392997  T

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Target: chr5; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 104 - 260
Target Start/End: Original strand, 17383894 - 17384055
Alignment:
Q  104 ggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagtta--aact----agcttgcgaagctgatcttcaattcgcaaca 197  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   |||    |||||| ||||||||| ||| ||||||||||    
T  17383894 ggaatatccagatcatgttccagaatgtgtttcgtctaatctaacaaaatttgaagttatgcactatgaagcttgggaagctgattttcgattcgcaaca 17383993  T
Q  198 tatattttgcagaatgcgagacttttacaagttatgtccattgaccatagtcttcacccaaat 260  Q
    |||||||||||||||||||||||||| | || |||| |||||  ||||| |||||||||||||    
T  17383994 tatattttgcagaatgcgagacttttgc-agatatgaccatttgccatactcttcacccaaat 17384055  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 32429477 - 32429428
Alignment:
Q  180 gatcttcaattcgcaacatatattttgcagaatgcgagacttttacaagt 229  Q
    |||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  32429477 gatcttcaattcgcaacatatattttgcagaatgcgaagcttttagaagt 32429428  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 299
Target Start/End: Original strand, 17384082 - 17384124
Alignment:
Q  257 aaatttatcctcctgtccaaggatctctcccacatgtaagctg 299  Q
    |||||||||||| |||||||||||||||||| |||||||||||    
T  17384082 aaatttatcctcttgtccaaggatctctccctcatgtaagctg 17384124  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 20112218 - 20112272
Alignment:
Q  179 tgatcttcaattcgcaacatatattttgcagaatgcgagacttttacaagttatg 233  Q
    |||| ||||||| ||||||||||||||||||||||| |||||| |||| ||||||    
T  20112218 tgattttcaatttgcaacatatattttgcagaatgcaagacttctacaggttatg 20112272  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 19653690 - 19653644
Alignment:
Q  193 caacatatattttgcagaatgcgagacttttacaagttatgtccatt 239  Q
    ||||||| ||||||| |||||||||||| |||||||||||| |||||    
T  19653690 caacatacattttgctgaatgcgagactcttacaagttatgaccatt 19653644  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 17380109 - 17380154
Alignment:
Q  104 ggaatatccagatcatgttccagaatgtgtttcgtctcatctaaca 149  Q
    |||||||||| ||||||||| ||| |||||||| ||||||||||||    
T  17380109 ggaatatccatatcatgttctagattgtgtttcatctcatctaaca 17380154  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 411
Target Start/End: Original strand, 17384143 - 17384248
Alignment:
Q  306 tagttcctagatgtatgtctggtgttttcgttagtttcaatacttgcttctactgaatttgatggttttaacaatataggcttatataaatcagtagtct 405  Q
    ||||||| ||||||||  | ||| |||| |||| || ||||| || || |||||| |||||||||||  ||||||||||||||||  |||||| | ||||    
T  17384143 tagttcccagatgtataccgggtatttttgttacttacaatatttactactactggatttgatggttcgaacaatataggcttattcaaatcaatggtct 17384242  T
Q  406 gccaat 411  Q
     |||||    
T  17384243 accaat 17384248  T

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Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 327 - 460
Target Start/End: Complemental strand, 26052689 - 26052557
Alignment:
Q  327 gtgttttcgttagtttcaatacttgcttctactgaatttgatggttttaacaatataggcttatataaatcagtagtctgccaatactttcttctttgca 426  Q
    ||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||||||||| |||||  ||||| | ||| |||||||||||| ||| ||||    
T  26052689 gtgtttttgttagtttcaatatttgctactactgaatttgatggtttgaacaatataggtttatactaatcaatggtccgccaatactttcatctgtgca 26052590  T
Q  427 ttgttttgttagctcaaattttcgcgatgagcca 460  Q
    ||||||||||| ||| |||||||| |||||||||    
T  26052589 ttgttttgttaactc-aattttcgtgatgagcca 26052557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 104 - 215
Target Start/End: Complemental strand, 26052859 - 26052742
Alignment:
Q  104 ggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagt--taaact----agcttgcgaagctgatcttcaattcgcaaca 197  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  || |||    |||||| ||| ||||| ||| ||||||||||    
T  26052859 ggaatatccagatcatgttccagaatgtgtttcatctcatctaacaaaatttgaagttatagactatgaagcttgtgaaactgatattcgattcgcaaca 26052760  T
Q  198 tatattttgcagaatgcg 215  Q
    ||||||||||||||||||    
T  26052759 tatattttgcagaatgcg 26052742  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 3254944 - 3254895
Alignment:
Q  179 tgatcttcaattcgcaacatatattttgcagaatgcgagacttttacaag 228  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  3254944 tgatcttcaatttgcaaaatatattttgcagaatgcgagtcttttacaag 3254895  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 14435649 - 14435590
Alignment:
Q  183 cttcaattcgcaacatatattttgcagaatgcgagacttttacaagttatgtccattgac 242  Q
    |||||||| |||| |||||| |||||||||||||| |||||||||| |||| | ||||||    
T  14435649 cttcaatttgcaaaatatatattgcagaatgcgaggcttttacaagatatgacaattgac 14435590  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 14438295 - 14438258
Alignment:
Q  196 catatattttgcagaatgcgagacttttacaagttatg 233  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  14438295 catatattttgcagaatgcgaggcttttacaagatatg 14438258  T

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Target: scaffold1377 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1377
Description:

Target: scaffold1377; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 1401 - 1349
Alignment:
Q  181 atcttcaattcgcaacatatattttgcagaatgcgagacttttacaagttatg 233  Q
    |||||| ||| |||||||||||||||||||||||||| |||||||||| ||||    
T  1401 atcttcgatttgcaacatatattttgcagaatgcgaggcttttacaagatatg 1349  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 299
Target Start/End: Original strand, 15785027 - 15785065
Alignment:
Q  261 ttatcctcctgtccaaggatctctcccacatgtaagctg 299  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  15785027 ttatcctcctgtccaaaaatctctcccacatgtaagctg 15785065  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 40809 - 40846
Alignment:
Q  113 agatcatgttccagaatgtgtttcgtctcatctaacaa 150  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  40809 agatcatgttcctgaatgtgtttcgtctcatcttacaa 40846  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 2467584 - 2467536
Alignment:
Q  179 tgatcttcaattcgcaacatatattttgcagaatgcgagacttttacaa 227  Q
    |||||||| ||| ||||||||||| |||||||||| |||| ||||||||    
T  2467584 tgatcttcgatttgcaacatatatattgcagaatgggagaattttacaa 2467536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 32224465 - 32224417
Alignment:
Q  174 gaagctgatcttcaattcgcaacatatattttgcagaatgcgagacttt 222  Q
    ||||||||| ||| ||| | ||||||||||||||||||||| |||||||    
T  32224465 gaagctgattttcgatttgtaacatatattttgcagaatgcaagacttt 32224417  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 32226939 - 32226975
Alignment:
Q  259 atttatcctcctgtccaaggatctctcccacatgtaa 295  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  32226939 atttatccttctgtccaaggatctctccgacatgtaa 32226975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 32241613 - 32241577
Alignment:
Q  259 atttatcctcctgtccaaggatctctcccacatgtaa 295  Q
    ||||||||||||||||||||||||||||  |||||||    
T  32241613 atttatcctcctgtccaaggatctctccggcatgtaa 32241577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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