View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_33 (Length: 490)
Name: NF1271_low_33
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 135 - 481
Target Start/End: Original strand, 43696246 - 43696588
Alignment:
| Q |
135 |
tgagctcatagagtccaataatgctagaaagcatgtcccatctttgcactatatattatacatttgattcagcttcattcaggtcacaatgggacagatt |
234 |
Q |
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| T |
43696246 |
tgagctcatagagtccaataatgctagaaagcatgtcccatctttgcactat----tatacatttgattcagcttcattcaggtcacaatgggacagatt |
43696341 |
T |
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| Q |
235 |
tactttttctattatttcccacctttccacttatggatataaaattaacttaatgacataatttagaatgttaagcatgcaatgcttttcaatcaataag |
334 |
Q |
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| T |
43696342 |
tactttttctattatttcccacctttccacttatggatataaaattaacttaatgacataatttagaatgttaagcatgcaatgcttttcaatcaataag |
43696441 |
T |
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| Q |
335 |
ttttctaatgacacaatttataagtaatatggagtatgattagtcacctgttgatgacgacggtgaacatgctcgttttttcaattggcttgtgttgcat |
434 |
Q |
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| T |
43696442 |
ttttctaatgacacaatttataagtaatatggagtatgattagtcacctgttgatgacgacggtgaacatgctcgttttttcaattggcttgtgttgcat |
43696541 |
T |
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| Q |
435 |
cacctgcttctattttgtcaacggatcctgcctcgcttaagaataat |
481 |
Q |
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| T |
43696542 |
cacctgcttctattttgtcaacggatcctgcctcgcttaataataat |
43696588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 32214108 - 32214076
Alignment:
| Q |
284 |
ttaatgacataatttagaatgttaagcatgcaa |
316 |
Q |
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| T |
32214108 |
ttaatgacataatttaaaatgttaagcatgcaa |
32214076 |
T |
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