View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_36 (Length: 484)
Name: NF1271_low_36
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_36 |
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| [»] scaffold0454 (2 HSPs) |
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Alignment Details
Target: scaffold0454 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: scaffold0454
Description:
Target: scaffold0454; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 129 - 431
Target Start/End: Original strand, 11500 - 11802
Alignment:
| Q |
129 |
gtagccagatcctttgtagcaacattatggtgtagctagcgagctgcatagttgttagattaagaaagaaagtaaaaattcatttagtatagtatataga |
228 |
Q |
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| T |
11500 |
gtagccagatcctttgtagcaacattatggtgtagctagcgagctgcatagttgttggattaagaaagaaagtaaaaattcatttactatagtatataga |
11599 |
T |
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| Q |
229 |
gagggtccattttcgacttagtatagctccaactaactatataaatgcaaatttagttgaagttgtatttactatttacatcaagatatcagtgttatgt |
328 |
Q |
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| T |
11600 |
gacggtccattttcgacttagtatagctgcaactaactatataaatgcaaatttagttgaagatgtatttactatttacaccatgatatcagtgttatgt |
11699 |
T |
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| Q |
329 |
gcaatttattgtcttttataacatattgttaattaatcagacactgaggaaaaagctgctagggcatatgatgcagcagcaaagaaattcaatggagagg |
428 |
Q |
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| T |
11700 |
gcaatttattgtcttttataacatattgttaattaatcagacactgaggaaaaagctgctagggcatatgatgcagcagcaaagaaattcaatggagagg |
11799 |
T |
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| Q |
429 |
atg |
431 |
Q |
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||| |
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| T |
11800 |
atg |
11802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0454; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 11406 - 11486
Alignment:
| Q |
8 |
ccaagaatattgtggctgcaattgcagatgcataccgcaatttaaaacc-atggccatctgcaccaatactatggtgcagct |
88 |
Q |
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| T |
11406 |
ccaacaatattgtggctgcaattgcagatgcataccgcaatttaaaaccaatggccatctg-accaatactatggtgcagct |
11486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 129 - 431
Target Start/End: Complemental strand, 22978353 - 22978051
Alignment:
| Q |
129 |
gtagccagatcctttgtagcaacattatggtgtagctagcgagctgcatagttgttagattaagaaagaaagtaaaaattcatttagtatagtatataga |
228 |
Q |
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| T |
22978353 |
gtagccagatcctttgtagcaacattatggtgtagctagcgagctgcatagttgttggattaagaaagaaagtaaaaattcatttactatagtatataga |
22978254 |
T |
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| Q |
229 |
gagggtccattttcgacttagtatagctccaactaactatataaatgcaaatttagttgaagttgtatttactatttacatcaagatatcagtgttatgt |
328 |
Q |
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| T |
22978253 |
gacggtccattttcgacttagtatagctgcaactaactatataaatgcaaatttagttgaagatgtatttactatttacaccatgatatcagtgttatgt |
22978154 |
T |
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| Q |
329 |
gcaatttattgtcttttataacatattgttaattaatcagacactgaggaaaaagctgctagggcatatgatgcagcagcaaagaaattcaatggagagg |
428 |
Q |
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| T |
22978153 |
gcaatttattgtcttttataacatattgttaattaatcagacactgaggaaaaagctgctagggcatatgatgcagcagcaaagaaattcaatggagagg |
22978054 |
T |
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| Q |
429 |
atg |
431 |
Q |
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||| |
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| T |
22978053 |
atg |
22978051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 310 - 434
Target Start/End: Complemental strand, 22965785 - 22965661
Alignment:
| Q |
310 |
caagatatcagtgttatgtgcaatttattgtcttttataacatattgttaattaatcagacactgaggaaaaagctgctagggcatatgatgcagcagca |
409 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | |
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| T |
22965785 |
caagatatcagtgttatgtgcaatttattatctgttataacatattgttaattaatcagacactgaggaaaaagcttctagagcatatgatgcagcagta |
22965686 |
T |
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| Q |
410 |
aagaaattcaatggagaggatgatc |
434 |
Q |
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| T |
22965685 |
aagaaattcaatggagaggatgatc |
22965661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 22978446 - 22978367
Alignment:
| Q |
8 |
ccaagaatattgtggctgcaattgcagatgcataccgcaatttaaaaccatggccatctgcaccaatactatggtgcagct |
88 |
Q |
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| T |
22978446 |
ccaacaatattgtggctgcaattgcagatgcataccgcaatttaaaaccatggccatctg-accaatactatggtgcagct |
22978367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 310 - 434
Target Start/End: Original strand, 21884843 - 21884967
Alignment:
| Q |
310 |
caagatatcagtgttatgtgcaatttattgtcttttataacatattgttaattaatcagacactgaggaaaaagctgctagggcatatgatgcagcagca |
409 |
Q |
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| T |
21884843 |
caagatatcagtgttatgtgcaatttattatctgttataacatattgttaattaatcagacactgaggaaaaagcttctagagcatatgatgcagcagta |
21884942 |
T |
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| Q |
410 |
aagaaattcaatggagaggatgatc |
434 |
Q |
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| T |
21884943 |
aagaaattcaatggagaggatgatc |
21884967 |
T |
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