View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1271_low_4 (Length: 692)
Name: NF1271_low_4
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 66 - 597
Target Start/End: Original strand, 4946973 - 4947504
Alignment:
| Q |
66 |
gcatctccaacaatattcgacaactttggctttcactttgatgacaacgaaaccacaccaaattgtttcccagttgaaactcatcctgatgatcaaacaa |
165 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4946973 |
gcatctccaacattattcgacaactttggctttcactttgatgacaacgaaacgacaccaaattgtttcccagttgaaactcatcctgatgatcaaacaa |
4947072 |
T |
|
| Q |
166 |
ggccaaccaagaagatcaagacatcgagaaccccttcttcccagtcatcacctcaactcatttcttttgagcactccagttcaacaccaattgcttcaaa |
265 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4947073 |
ggccaaccaagaagatcaagacatcgataaccccttcttcccagtcatcacctcaactcatttcttttgagcactccagttcaacaccaattgcttcaaa |
4947172 |
T |
|
| Q |
266 |
gcaattttataaccttgattattcagatgtaaaacctaaagtcgagaaaaggtttaatgaaaacaaggattttctaccagctttggtttctcaaggttct |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4947173 |
gcaattttataaccttgattattcagatgtaaaacctaaagtcgggaaaaggtgtaatgaaaacaaggattttctaccagctttggtttctcaaggttct |
4947272 |
T |
|
| Q |
366 |
tatgaagatcaaaaaatattttccaattatgataaccaagcgaatcagaccagaaacacttctcaagctcgagaacatgtaatggccgaaagaaaacgaa |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4947273 |
tatgaagatcaaaaaatattttccaattatgataaccaagcgaatcagaccagaaacactgctcaagctcgagaacatgtaatggccgaaagaaaacgaa |
4947372 |
T |
|
| Q |
466 |
gggaaaagcttacccgaagtttcatcgctctttcagccattgttcctggcctcaagaaggtatgatcttattcaactcataaacatgttattataatgta |
565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4947373 |
gggaaaagcttacccgaagtttcatcgctctttcagccattgttcctggcctcaagaaggtatgatcttattcaactcataaacatgttattataatgta |
4947472 |
T |
|
| Q |
566 |
actccattcaaaccatttatatatcaacatat |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
4947473 |
actccattcaaaccatttatatatcaacatat |
4947504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 432 - 527
Target Start/End: Complemental strand, 40441933 - 40441838
Alignment:
| Q |
432 |
gctcgagaacatgtaatggccgaaagaaaacgaagggaaaagcttacccgaagtttcatcgctctttcagccattgttcctggcctcaagaaggta |
527 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||||||||||||||| || || ||||| || ||||| | ||| ||||||| ||||| |||||| |
|
|
| T |
40441933 |
gctcgagatcatgttatcgccgaaagaaaacgaagggaaaagcttagccagagattcattgcactttcctctattcttcctggactcaaaaaggta |
40441838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 527
Target Start/End: Complemental strand, 40426845 - 40426750
Alignment:
| Q |
432 |
gctcgagaacatgtaatggccgaaagaaaacgaagggaaaagcttacccgaagtttcatcgctctttcagccattgttcctggcctcaagaaggta |
527 |
Q |
| |
|
|||| ||| ||||| ||||||||||||| ||||||||||||||||| || || ||||| |||||||| | || ||||||| ||||| |||||| |
|
|
| T |
40426845 |
gctcaagatcatgttatggccgaaagaagacgaagggaaaagcttagccagagattcatttctctttcatctcttcttcctggactcaaaaaggta |
40426750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University