View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_41 (Length: 477)
Name: NF1271_low_41
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 14 - 393
Target Start/End: Original strand, 38661724 - 38662124
Alignment:
| Q |
14 |
ctgttgcagcatccaaaggaattaacaaaaatactttttcatgaattttccttttataggtgatgactgtgtttccattgggtctggttgctatgatgtt |
113 |
Q |
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| T |
38661724 |
ctgttgcagcatccaaaggaattaacaaaaatactttttcatgaattttccttttataggtgatgactgtgtttccattgggtctggttgctatgatgtt |
38661823 |
T |
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| Q |
114 |
gatataaaaaatatcacatgtggaccaggtcatggcattaggtaaattattctctccnnnnnnnncttcatgaaaagttacatttaatagtatggatacg |
213 |
Q |
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| T |
38661824 |
gatataaaaaatatcacatgtggaccaggtcatggcattaggtaaattattctctccttttttttcttcatgaaaagttacatttaatagtatggatatg |
38661923 |
T |
|
| Q |
214 |
agttgagtgcggtcacaatcccgtggccgcatgcagtcaagctcaatattttagatttcaaagaatctgcgttgaaatctggaatattttatcttgatca |
313 |
Q |
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| T |
38661924 |
agttgagtgcggtcacaaccccgtggccgcatgcagtcaagctcaatattttagatttcaaagaatatgcgttgaaatctggaatatttgatcttgatca |
38662023 |
T |
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| Q |
314 |
aacgatctagatgt---------------------gtacaatccaaattttcaattaatgagctttatactttatatattgttgtaatggtacatgattt |
392 |
Q |
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| T |
38662024 |
aacgatctagatgtggttgactgcactcacaccacgtagaatccaaattttcaattaataagctttatactttatatattgttgtaatggtacatgattt |
38662123 |
T |
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| Q |
393 |
a |
393 |
Q |
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| T |
38662124 |
a |
38662124 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 64 - 158
Target Start/End: Complemental strand, 45102390 - 45102296
Alignment:
| Q |
64 |
cttttataggtgatgactgtgtttccattgggtctggttgctatgatgttgatataaaaaatatcacatgtggaccaggtcatggcattaggtaa |
158 |
Q |
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|||| ||||||||||||||||| |||||||| | || ||||||||||||||||||| || || || |||||||| ||||||| ||||||||| |
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| T |
45102390 |
ctttcataggtgatgactgtgtgtccattggaaccgggagctatgatgttgatataaagaacattacttgtggacctagtcatggaattaggtaa |
45102296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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