View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_43 (Length: 472)

Name: NF1271_low_43
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_43
NF1271_low_43
[»] chr6 (29 HSPs)
chr6 (54-459)||(32299242-32299647)
chr6 (54-192)||(32298259-32298400)
chr6 (380-458)||(30866157-30866235)
chr6 (369-439)||(7265595-7265665)
chr6 (369-418)||(9617442-9617491)
chr6 (251-328)||(32313514-32313591)
chr6 (386-438)||(43704-43756)
chr6 (369-417)||(9629392-9629440)
chr6 (386-440)||(19602200-19602254)
chr6 (381-439)||(31579239-31579297)
chr6 (369-414)||(7377991-7378036)
chr6 (369-418)||(9025496-9025545)
chr6 (393-458)||(34447384-34447449)
chr6 (377-421)||(2140491-2140535)
chr6 (380-420)||(13815448-13815488)
chr6 (367-419)||(15443702-15443754)
chr6 (375-418)||(5462694-5462737)
chr6 (380-431)||(7569181-7569232)
chr6 (368-439)||(9658866-9658937)
chr6 (387-438)||(33135233-33135284)
chr6 (369-419)||(11784218-11784268)
chr6 (393-439)||(17168489-17168535)
chr6 (380-418)||(19040360-19040398)
chr6 (369-435)||(33001291-33001357)
chr6 (369-418)||(7086803-7086852)
chr6 (369-418)||(20371112-20371161)
chr6 (372-417)||(26314639-26314684)
chr6 (386-419)||(29049892-29049925)
chr6 (380-440)||(26562675-26562735)
[»] chr4 (29 HSPs)
chr4 (369-458)||(33950104-33950193)
chr4 (380-458)||(19230322-19230400)
chr4 (369-418)||(8423720-8423769)
chr4 (386-445)||(12077809-12077868)
chr4 (361-420)||(43299965-43300024)
chr4 (361-420)||(43300622-43300681)
chr4 (380-454)||(903894-903968)
chr4 (388-446)||(8820388-8820446)
chr4 (388-441)||(43188597-43188650)
chr4 (380-417)||(46715487-46715524)
chr4 (386-422)||(5654610-5654646)
chr4 (386-418)||(24613720-24613752)
chr4 (381-416)||(2234260-2234295)
chr4 (386-421)||(10546153-10546188)
chr4 (380-439)||(36635311-36635370)
chr4 (380-418)||(7214535-7214573)
chr4 (386-420)||(18513260-18513294)
chr4 (388-458)||(20521870-20521940)
chr4 (386-440)||(20743297-20743351)
chr4 (380-418)||(22440613-22440651)
chr4 (365-431)||(29205439-29205505)
chr4 (386-435)||(5176975-5177024)
chr4 (369-418)||(5775360-5775409)
chr4 (389-418)||(34200293-34200322)
chr4 (369-418)||(54580025-54580074)
chr4 (391-431)||(9996835-9996875)
chr4 (386-418)||(14465094-14465126)
chr4 (380-420)||(24343513-24343553)
chr4 (380-439)||(35723397-35723457)
[»] chr2 (24 HSPs)
chr2 (367-437)||(18420434-18420504)
chr2 (381-445)||(21782832-21782896)
chr2 (380-445)||(35449494-35449559)
chr2 (365-458)||(31284016-31284110)
chr2 (369-443)||(37497103-37497177)
chr2 (381-422)||(4332930-4332971)
chr2 (370-439)||(23718013-23718082)
chr2 (370-439)||(24105685-24105754)
chr2 (371-439)||(30527599-30527667)
chr2 (369-420)||(31026701-31026752)
chr2 (368-419)||(44605140-44605191)
chr2 (386-420)||(18570978-18571012)
chr2 (380-418)||(21616770-21616808)
chr2 (386-420)||(30563415-30563449)
chr2 (368-418)||(39026826-39026876)
chr2 (366-436)||(39279665-39279735)
chr2 (386-420)||(40681988-40682022)
chr2 (386-439)||(896198-896251)
chr2 (381-418)||(2331802-2331839)
chr2 (369-418)||(5367200-5367249)
chr2 (386-419)||(19613632-19613665)
chr2 (386-439)||(27084249-27084302)
chr2 (369-418)||(44860328-44860377)
chr2 (367-439)||(31808064-31808136)
[»] chr7 (25 HSPs)
chr7 (369-437)||(6326686-6326754)
chr7 (369-445)||(20549772-20549848)
chr7 (307-418)||(21880160-21880271)
chr7 (391-439)||(45056925-45056973)
chr7 (380-431)||(12278830-12278881)
chr7 (361-420)||(44020981-44021040)
chr7 (386-421)||(44172909-44172944)
chr7 (370-420)||(3520345-3520395)
chr7 (380-422)||(16341500-16341542)
chr7 (386-420)||(38134425-38134459)
chr7 (369-458)||(598176-598265)
chr7 (381-418)||(2424622-2424659)
chr7 (369-418)||(7438714-7438763)
chr7 (381-418)||(11700811-11700848)
chr7 (369-418)||(19206058-19206107)
chr7 (369-418)||(19992009-19992058)
chr7 (369-418)||(24146824-24146873)
chr7 (381-418)||(29787383-29787420)
chr7 (386-439)||(32308107-32308160)
chr7 (367-419)||(15902829-15902881)
chr7 (386-422)||(21247755-21247791)
chr7 (369-413)||(22602712-22602756)
chr7 (369-445)||(25791634-25791709)
chr7 (386-418)||(35861972-35862004)
chr7 (386-422)||(41360914-41360950)
[»] chr5 (24 HSPs)
chr5 (371-418)||(30098334-30098381)
chr5 (369-418)||(22423814-22423863)
chr5 (386-419)||(9449476-9449509)
chr5 (365-418)||(23012406-23012459)
chr5 (369-418)||(28588676-28588725)
chr5 (382-422)||(32428941-32428981)
chr5 (386-445)||(24906320-24906379)
chr5 (336-418)||(30502357-30502439)
chr5 (336-418)||(30542700-30542782)
chr5 (380-418)||(6471902-6471940)
chr5 (386-420)||(11596474-11596508)
chr5 (365-439)||(17123035-17123109)
chr5 (369-419)||(17925174-17925224)
chr5 (386-420)||(18607116-18607150)
chr5 (386-420)||(28296334-28296368)
chr5 (369-418)||(3966511-3966560)
chr5 (386-439)||(31084310-31084363)
chr5 (367-420)||(38749563-38749616)
chr5 (386-435)||(43208293-43208342)
chr5 (380-420)||(5467991-5468031)
chr5 (380-440)||(7997179-7997239)
chr5 (370-418)||(17593725-17593773)
chr5 (388-420)||(19737503-19737535)
chr5 (380-420)||(32630748-32630788)
[»] chr1 (35 HSPs)
chr1 (380-439)||(6427337-6427396)
chr1 (369-439)||(2896123-2896193)
chr1 (365-418)||(1864878-1864931)
chr1 (384-439)||(40285671-40285726)
chr1 (369-439)||(36878448-36878518)
chr1 (391-448)||(9449032-9449089)
chr1 (380-420)||(17425106-17425146)
chr1 (391-439)||(36905984-36906032)
chr1 (380-420)||(40747786-40747826)
chr1 (386-434)||(42325552-42325600)
chr1 (386-445)||(27471585-27471644)
chr1 (379-418)||(34298444-34298483)
chr1 (369-416)||(44482240-44482287)
chr1 (381-419)||(2288181-2288219)
chr1 (380-418)||(7918224-7918262)
chr1 (386-420)||(11571591-11571625)
chr1 (380-418)||(40181879-40181917)
chr1 (369-427)||(41017406-41017464)
chr1 (389-418)||(1262892-1262921)
chr1 (369-418)||(1486711-1486760)
chr1 (386-419)||(3921674-3921707)
chr1 (369-418)||(9709828-9709877)
chr1 (336-420)||(11412736-11412821)
chr1 (380-445)||(19562634-19562699)
chr1 (369-418)||(38078663-38078712)
chr1 (371-412)||(46914043-46914084)
chr1 (388-420)||(351105-351137)
chr1 (366-434)||(10233245-10233313)
chr1 (386-418)||(12443479-12443511)
chr1 (391-439)||(16812530-16812578)
chr1 (380-416)||(19324572-19324608)
chr1 (380-416)||(25098568-25098604)
chr1 (380-416)||(25361896-25361932)
chr1 (386-418)||(31015051-31015083)
chr1 (384-420)||(48785281-48785317)
[»] chr8 (25 HSPs)
chr8 (369-419)||(12985399-12985449)
chr8 (369-418)||(14134707-14134756)
chr8 (14-57)||(7314050-7314094)
chr8 (370-418)||(31236580-31236628)
chr8 (365-418)||(7658471-7658524)
chr8 (369-418)||(12606831-12606880)
chr8 (386-422)||(3508056-3508092)
chr8 (386-418)||(29447129-29447161)
chr8 (380-419)||(34201059-34201098)
chr8 (380-418)||(3025559-3025597)
chr8 (367-445)||(11803240-11803318)
chr8 (369-439)||(13844598-13844668)
chr8 (369-439)||(33405386-33405456)
chr8 (380-418)||(34897093-34897131)
chr8 (380-458)||(44067484-44067562)
chr8 (369-418)||(4786340-4786389)
chr8 (369-418)||(11927088-11927137)
chr8 (386-419)||(14227229-14227262)
chr8 (369-418)||(20679397-20679446)
chr8 (365-418)||(26434188-26434241)
chr8 (386-419)||(37225762-37225795)
chr8 (365-418)||(38278173-38278226)
chr8 (386-418)||(29198498-29198530)
chr8 (384-420)||(34739078-34739114)
chr8 (369-417)||(40332200-40332248)
[»] scaffold0022 (2 HSPs)
scaffold0022 (373-445)||(90824-90896)
scaffold0022 (380-420)||(99899-99939)
[»] chr3 (23 HSPs)
chr3 (334-420)||(15304569-15304656)
chr3 (380-418)||(9624649-9624687)
chr3 (389-451)||(13807144-13807206)
chr3 (380-457)||(25652044-25652121)
chr3 (382-458)||(11610489-11610565)
chr3 (380-458)||(4466613-4466691)
chr3 (391-445)||(11658796-11658850)
chr3 (369-439)||(39002019-39002089)
chr3 (386-420)||(52369781-52369815)
chr3 (369-418)||(7614417-7614466)
chr3 (369-418)||(7928458-7928507)
chr3 (369-418)||(8383265-8383314)
chr3 (381-418)||(11251986-11252023)
chr3 (394-459)||(12674528-12674593)
chr3 (386-415)||(12704056-12704085)
chr3 (369-422)||(20691323-20691376)
chr3 (365-418)||(24633399-24633452)
chr3 (369-418)||(38731226-38731275)
chr3 (386-419)||(46191364-46191397)
chr3 (369-418)||(47362570-47362619)
chr3 (386-418)||(5339116-5339148)
chr3 (388-420)||(9210846-9210878)
chr3 (367-439)||(17005619-17005691)
[»] scaffold0085 (1 HSPs)
scaffold0085 (380-418)||(26401-26439)
[»] scaffold0020 (1 HSPs)
scaffold0020 (369-433)||(135314-135378)
[»] scaffold0110 (1 HSPs)
scaffold0110 (367-418)||(28858-28909)
[»] scaffold0044 (1 HSPs)
scaffold0044 (370-417)||(53189-53236)
[»] scaffold0007 (1 HSPs)
scaffold0007 (380-439)||(225281-225340)
[»] scaffold0571 (1 HSPs)
scaffold0571 (388-422)||(7694-7728)
[»] scaffold0036 (1 HSPs)
scaffold0036 (369-418)||(9749-9798)
[»] scaffold0027 (1 HSPs)
scaffold0027 (369-418)||(46690-46739)


Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 54 - 459
Target Start/End: Complemental strand, 32299647 - 32299242
Alignment:
Q  54 ttgaaattttaaaacttttacttttctgttttggttggatctgacatttatatttcctgtccattgacctattagacctgaccctggccctcaactattg 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32299647 ttgaaattttaaaacttttacttttctgttttggttggatctgacatttatatttcctgtccattgacctattagacctgaccctggccctcaactattg 32299548  T
Q  154 tggcatttagcaactgccagttagtggacctatccttttgcttatataattttagggttgaacaatttttcatgaacagtatgcctgactgatagtagta 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32299547 tggcatttagcaactgccagttagtggacctatccttttgcttatataattttagggttgaacaatttttcatgaacagtatgcctgactgatagtagta 32299448  T
Q  254 tcagcaactgttgcattcagtagacttgtttcgtcgaaaatgcctgtggtatactatgaagcacggacatttctctaaataagcatgtcctagtgtagga 353  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||| ||||||||||    
T  32299447 tcagcaacttttgcattcagtagacttgtttcgtcgaaaatgcctgtggtatagtatgaagcacagacatttctctgaataagcatgtcttagtgtagga 32299348  T
Q  354 catggtcggtttccaacaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctg 453  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32299347 catggtcggttttcaacaccgacacgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtatttgtgttatgtctg 32299248  T
Q  454 gtgtct 459  Q
    ||||||    
T  32299247 gtgtct 32299242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 54 - 192
Target Start/End: Complemental strand, 32298400 - 32298259
Alignment:
Q  54 ttgaaattttaaaacttttacttttctgttttggt---tggatctgacatttatatttcctgtccattgacctattagacctgaccctggccctcaacta 150  Q
    ||||||||||||||||||||||||||| |||||||   ||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  32298400 ttgaaattttaaaacttttacttttctattttggtcattggatctgacaattatatttcctgtccattgacttatttgacctgaccctggccctcaacta 32298301  T
Q  151 ttgtggcatttagcaactgccagttagtggacctatcctttt 192  Q
    |||||||||||| ||| |||| || |||||||||||||||||    
T  32298300 ttgtggcatttatcaattgcccgtaagtggacctatcctttt 32298259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 458
Target Start/End: Original strand, 30866157 - 30866235
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtc 458  Q
    ||||| ||||||||||||||||||||||||||||||||| | | ||||||||||| ||||  |||| ||||| ||||||    
T  30866157 tataattacattgaattatgtgattttctcaaattattagcggtgttggtgtgtcggtgtcagtgtcatgtccggtgtc 30866235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 439
Target Start/End: Original strand, 7265595 - 7265665
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    |||||||||  ||||| |||| |||||||||||||||||||||||||||| | | ||||| ||||||||||    
T  7265595 acaccgacacatataattacactgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgt 7265665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 9617491 - 9617442
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||||||    
T  9617491 acaccgacacatataattacattgaattatgtgattttctcaaattatta 9617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 32313591 - 32313514
Alignment:
Q  251 gtatcagcaactgttgcattcagtagacttgtttcgtcgaaaatgcctgtggtatactatgaagcacggacatttctc 328  Q
    |||||||||||| ||| || |||||| ||||| | |||||||||| ||  || |||||||||||||||||||||||||    
T  32313591 gtatcagcaacttttgtatccagtaggcttgtcttgtcgaaaatgtctacggcatactatgaagcacggacatttctc 32313514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 438
Target Start/End: Complemental strand, 43756 - 43704
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtg 438  Q
    |||||||||||| |||||||||||||||||||| ||| |||||||||| ||||    
T  43756 tacattgaattacgtgattttctcaaattattagcagtgttggtgtgttagtg 43704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 417
Target Start/End: Complemental strand, 9629440 - 9629392
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatt 417  Q
    |||||||||  ||||| ||||||||||||||||||||||||||||||||    
T  9629440 acaccgacacatataattacattgaattatgtgattttctcaaattatt 9629392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 440
Target Start/End: Original strand, 19602200 - 19602254
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtt 440  Q
    |||| |||||||| | ||||||||||||||||||||| ||||||||||| |||||    
T  19602200 tacactgaattatatcattttctcaaattattatcagtgttggtgtgtccgtgtt 19602254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 439
Target Start/End: Original strand, 31579239 - 31579297
Alignment:
Q  381 ataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    |||| |||| |||||||||||||||||||||||||||| | | ||||||||| ||||||    
T  31579239 ataattacactgaattatgtgattttctcaaattattaacggtgttggtgtggcagtgt 31579297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 414
Target Start/End: Complemental strand, 7378036 - 7377991
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaatt 414  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||    
T  7378036 acaccgacacatataattacattgaattatgtgattttctcaaatt 7377991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 9025496 - 9025545
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  ||||| |||| ||||||||||||||||||||||||||||    
T  9025496 acaccgacacatataattacactgaattatgtgattttctcaaattatta 9025545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 458
Target Start/End: Original strand, 34447384 - 34447449
Alignment:
Q  393 aattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtc 458  Q
    |||||| ||||||| ||||||||||| | | ||||| |||||| ||| ||||||||||||||||||    
T  34447384 aattatatgattttatcaaattattaacggtgttggcgtgtcattgtctgtgttatgtctggtgtc 34447449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 421
Target Start/End: Original strand, 2140491 - 2140535
Alignment:
Q  377 atgtataactacattgaattatgtgattttctcaaattattatca 421  Q
    |||||||  ||||||||||||||| ||||||||||||||||||||    
T  2140491 atgtatagttacattgaattatgtcattttctcaaattattatca 2140535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 420
Target Start/End: Complemental strand, 13815488 - 13815448
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattatc 420  Q
    ||||||| ||||||||||||||||||||||||| |||||||    
T  13815488 tataacttcattgaattatgtgattttctcaaaatattatc 13815448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 419
Target Start/End: Complemental strand, 15443754 - 15443702
Alignment:
Q  367 caacaccgacatgtataactacattgaattatgtgattttctcaaattattat 419  Q
    ||||||| |||| ||||| || |||||||||||| ||||||||||||||||||    
T  15443754 caacaccaacatatataattatattgaattatgttattttctcaaattattat 15443702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 418
Target Start/End: Complemental strand, 5462737 - 5462694
Alignment:
Q  375 acatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||| ||||| |||| ||||||||||||||||||||||||||||    
T  5462737 acatatataattacaatgaattatgtgattttctcaaattatta 5462694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 431
Target Start/End: Original strand, 7569181 - 7569232
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattatcagggttggtgt 431  Q
    ||||| |||| |||||||||| ||||||||||||||||||| | ||||||||    
T  7569181 tataattacactgaattatgtaattttctcaaattattatctgtgttggtgt 7569232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 439
Target Start/End: Complemental strand, 9658937 - 9658866
Alignment:
Q  368 aacaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    ||||||||||  ||||| |||| |||||||||||||||||| ||||||||| | | || || ||||||||||    
T  9658937 aacaccgacaaatataattacactgaattatgtgattttcttaaattattagcggtgtcggcgtgtcagtgt 9658866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 33135284 - 33135233
Alignment:
Q  387 acattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtg 438  Q
    |||||||||||||| |||||| ||||||||||||||||| |  |||||||||    
T  33135284 acattgaattatgttattttcacaaattattatcagggtcgccgtgtcagtg 33135233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 419
Target Start/End: Original strand, 11784218 - 11784268
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattattat 419  Q
    |||||||||| ||||| |||| ||| | |||||||||||||||||||||||    
T  11784218 acaccgacatatataattacactgattcatgtgattttctcaaattattat 11784268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 439
Target Start/End: Original strand, 17168489 - 17168535
Alignment:
Q  393 aattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    |||||| | ||||||||||||||||||||| ||||| ||||||||||    
T  17168489 aattatatcattttctcaaattattatcagtgttggcgtgtcagtgt 17168535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 418
Target Start/End: Complemental strand, 19040398 - 19040360
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattatta 418  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  19040398 tataattacactgaattatgtgattttctcaaattatta 19040360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 33001291 - 33001357
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtca 435  Q
    |||||||||  ||||| |||||| |||||||||||||| ||||||||||| ||| || || ||||||    
T  33001291 acaccgacacatataattacatttaattatgtgattttttcaaattattagcagtgtcggcgtgtca 33001357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 7086852 - 7086803
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  ||||| |||| | ||||||||||||||||||||||||||    
T  7086852 acaccgacacatataattacactaaattatgtgattttctcaaattatta 7086803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 20371112 - 20371161
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  |||||  ||||||| ||||||||||||||||||||||||    
T  20371112 acaccgacacatataatcacattgagttatgtgattttctcaaattatta 20371161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 26314639 - 26314684
Alignment:
Q  372 ccgacatgtataactacattgaattatgtgattttctcaaattatt 417  Q
    ||||||| ||||| ||||||||||||| ||||||| ||||||||||    
T  26314639 ccgacatatataattacattgaattatatgattttttcaaattatt 26314684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Complemental strand, 29049925 - 29049892
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattat 419  Q
    ||||||||||||||| ||||||||||||||||||    
T  29049925 tacattgaattatgtaattttctcaaattattat 29049892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 26562735 - 26562675
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtt 440  Q
    ||||| |||| |||||||||||||||||||||||| ||| ||| || || ||||| |||||    
T  26562735 tataattacactgaattatgtgattttctcaaatttttagcagtgtcggcgtgtccgtgtt 26562675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 369 - 458
Target Start/End: Complemental strand, 33950193 - 33950104
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtc 458  Q
    |||||||||  ||| | |||||| |||||||||||||||||||||||||| | | ||||  ||||||||||| |||||||||||||||||    
T  33950193 acaccgacacatatgattacattaaattatgtgattttctcaaattattagcggcgttgaagtgtcagtgttcgtgttatgtctggtgtc 33950104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 380 - 458
Target Start/End: Original strand, 19230322 - 19230400
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtc 458  Q
    ||||| ||||||||||||||| |||||||||||||||||||   ||   ||||||||||||||| || |||||||||||    
T  19230322 tataattacattgaattatgttattttctcaaattattatctatgtccatgtgtcagtgtttgtattgtgtctggtgtc 19230400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 8423720 - 8423769
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||| ||||| |||| ||||||||||||||||||||||||||||    
T  8423720 acaccgacatttataattacactgaattatgtgattttctcaaattatta 8423769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 386 - 445
Target Start/End: Complemental strand, 12077868 - 12077809
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgt 445  Q
    ||||||||||||||||||||||||||||||||| |||  |||  ||||||||||| ||||    
T  12077868 tacattgaattatgtgattttctcaaattattaacagtattgacgtgtcagtgttcgtgt 12077809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 420
Target Start/End: Original strand, 43299965 - 43300024
Alignment:
Q  361 ggtttccaacaccgacatgtataactacattgaattatgtgattttctcaaattattatc 420  Q
    |||||||||||||| ||  ||| | ||||||||||||||| |||||||||||||||||||    
T  43299965 ggtttccaacaccggcagatatgattacattgaattatgtaattttctcaaattattatc 43300024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 420
Target Start/End: Complemental strand, 43300681 - 43300622
Alignment:
Q  361 ggtttccaacaccgacatgtataactacattgaattatgtgattttctcaaattattatc 420  Q
    ||||||||||| |||||  ||| | ||||||||||||||| |||||||||||||||||||    
T  43300681 ggtttccaacagcgacaaatatgattacattgaattatgtaattttctcaaattattatc 43300622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 454
Target Start/End: Complemental strand, 903968 - 903894
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctgg 454  Q
    ||||| |||| |||||||||||||||||||||||||||| | | |  |||||||||||||  || ||||||||||    
T  903968 tataattacactgaattatgtgattttctcaaattattaacggtgccggtgtgtcagtgtccgttttatgtctgg 903894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 446
Target Start/End: Complemental strand, 8820446 - 8820388
Alignment:
Q  388 cattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgtt 446  Q
    ||||||||||||||||||| |||||||||||||   ||||  |||||||||||||||||    
T  8820446 cattgaattatgtgattttatcaaattattatcgatgttgacgtgtcagtgtttgtgtt 8820388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 441
Target Start/End: Complemental strand, 43188650 - 43188597
Alignment:
Q  388 cattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgttt 441  Q
    ||||||||||||| ||||||||||||||||||||| ||  ||||||| ||||||    
T  43188650 cattgaattatgtcattttctcaaattattatcagtgtctgtgtgtctgtgttt 43188597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 417
Target Start/End: Original strand, 46715487 - 46715524
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattatt 417  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  46715487 tataactacattgaattatgtgattgtctcaaattatt 46715524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 422
Target Start/End: Original strand, 5654610 - 5654646
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatcag 422  Q
    ||||||||||||||| |||||||||||||||||||||    
T  5654610 tacattgaattatgtcattttctcaaattattatcag 5654646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 418
Target Start/End: Original strand, 24613720 - 24613752
Alignment:
Q  386 tacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||||||||||||||||||||||||||    
T  24613720 tacattgaattatgtgattttctcaaattatta 24613752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 416
Target Start/End: Complemental strand, 2234295 - 2234260
Alignment:
Q  381 ataactacattgaattatgtgattttctcaaattat 416  Q
    |||| |||||||||||||||||||||||||||||||    
T  2234295 ataattacattgaattatgtgattttctcaaattat 2234260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 421
Target Start/End: Complemental strand, 10546188 - 10546153
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatca 421  Q
    ||||||||||||||| ||||||||||||||||||||    
T  10546188 tacattgaattatgtcattttctcaaattattatca 10546153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 439
Target Start/End: Complemental strand, 36635370 - 36635311
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    ||||| |||| ||||||||||||||||||||||||||||   | ||||| ||||||||||    
T  36635370 tataattacactgaattatgtgattttctcaaattattagtggtgttggcgtgtcagtgt 36635311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 418
Target Start/End: Original strand, 7214535 - 7214573
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattatta 418  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  7214535 tataattacattaaattatgtgattttctcaaattatta 7214573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 420
Target Start/End: Original strand, 18513260 - 18513294
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatc 420  Q
    ||||||||||||||| |||||||||||||||||||    
T  18513260 tacattgaattatgtcattttctcaaattattatc 18513294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 458
Target Start/End: Original strand, 20521870 - 20521940
Alignment:
Q  388 cattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtc 458  Q
    ||||||||||||||||||| ||||||||||||| |  | || ||||||||||  ||||  |||||||||||    
T  20521870 cattgaattatgtgattttatcaaattattatcggtatcggcgtgtcagtgtccgtgtcgtgtctggtgtc 20521940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 440
Target Start/End: Original strand, 20743297 - 20743351
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtt 440  Q
    |||| |||||||||| ||||||||||||||||||| | || || |||||||||||    
T  20743297 tacactgaattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtt 20743351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 418
Target Start/End: Original strand, 22440613 - 22440651
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattatta 418  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  22440613 tataattacactgaattatgtgattttctcaaattatta 22440651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 431
Target Start/End: Complemental strand, 29205505 - 29205439
Alignment:
Q  365 tccaacaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgt 431  Q
    |||||||||||||  | ||| |||| |||||||||||||||| ||||||||||| | | ||||||||    
T  29205505 tccaacaccgacacttgtaattacactgaattatgtgattttttcaaattattagccgtgttggtgt 29205439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 435
Target Start/End: Complemental strand, 5177024 - 5176975
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtca 435  Q
    ||||||||||||||| ||||||||||| ||||||||  ||||||| ||||    
T  5177024 tacattgaattatgttattttctcaaaatattatcaatgttggtgcgtca 5176975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 5775360 - 5775409
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  ||||| |||| | ||||||||||||||||||||||||||    
T  5775360 acaccgacacatataattacacttaattatgtgattttctcaaattatta 5775409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 418
Target Start/End: Original strand, 34200293 - 34200322
Alignment:
Q  389 attgaattatgtgattttctcaaattatta 418  Q
    ||||||||||||||||||||||||||||||    
T  34200293 attgaattatgtgattttctcaaattatta 34200322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 54580025 - 54580074
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  ||||| |||| |||||||||||||||| |||||||||||    
T  54580025 acaccgacacttataattacactgaattatgtgattttttcaaattatta 54580074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 431
Target Start/End: Complemental strand, 9996875 - 9996835
Alignment:
Q  391 tgaattatgtgattttctcaaattattatcagggttggtgt 431  Q
    ||||||||||||||||||||||||||| |||| || |||||    
T  9996875 tgaattatgtgattttctcaaattattgtcagtgtcggtgt 9996835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 418
Target Start/End: Original strand, 14465094 - 14465126
Alignment:
Q  386 tacattgaattatgtgattttctcaaattatta 418  Q
    ||||||||||||||||||||| |||||||||||    
T  14465094 tacattgaattatgtgattttttcaaattatta 14465126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 420
Target Start/End: Complemental strand, 24343553 - 24343513
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattatc 420  Q
    ||||| |||| |||||||||| |||||||||||||||||||    
T  24343553 tataattacactgaattatgtaattttctcaaattattatc 24343513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 439
Target Start/End: Original strand, 35723397 - 35723457
Alignment:
Q  380 tataactacattgaattatgtg-attttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    ||||| |||||||||||||||| ||||||||||||||||| | | || || ||||||||||    
T  35723397 tataattacattgaattatgtgtattttctcaaattattagcggtgtcggcgtgtcagtgt 35723457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 437
Target Start/End: Original strand, 18420434 - 18420504
Alignment:
Q  367 caacaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagt 437  Q
    |||||||||||  ||||| | ||||||||||||||||||||||||||||||| ||| ||||| ||||||||    
T  18420434 caacaccgacacttataattgcattgaattatgtgattttctcaaattattagcagtgttggcgtgtcagt 18420504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 381 - 445
Target Start/End: Original strand, 21782832 - 21782896
Alignment:
Q  381 ataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgt 445  Q
    |||| |||| |||||||||||||||||||||||||||| ||| || || ||||||||||||||||    
T  21782832 ataattacactgaattatgtgattttctcaaattattagcagtgtcggcgtgtcagtgtttgtgt 21782896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 445
Target Start/End: Complemental strand, 35449559 - 35449494
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgt 445  Q
    ||||| |||| |||||| ||||||||||||||||||||| ||| |||||  |||||||||||||||    
T  35449559 tataattacactgaattctgtgattttctcaaattattaacagtgttggcttgtcagtgtttgtgt 35449494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 458
Target Start/End: Complemental strand, 31284110 - 31284016
Alignment:
Q  365 tccaacaccgacatgta-taactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtc 458  Q
    |||||||||||||  || ||| |||| || ||||||||||||||||||||||||| ||| || || |||| |||||  |||||||||| ||||||    
T  31284110 tccaacaccgacacataataattacaatggattatgtgattttctcaaattattagcagtgtcggcgtgtaagtgtacgtgttatgtccggtgtc 31284016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 443
Target Start/End: Complemental strand, 37497177 - 37497103
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgt 443  Q
    |||||||||  ||| | ||||||||||| ||  ||||||||||||||||||||| || | |||||||||||||||    
T  37497177 acaccgacagatattattacattgaattgtggcattttctcaaattattatcagtgtcgatgtgtcagtgtttgt 37497103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 4332971 - 4332930
Alignment:
Q  381 ataactacattgaattatgtgattttctcaaattattatcag 422  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  4332971 ataattacattgaattatgtgattttcccaaattattatcag 4332930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 439
Target Start/End: Complemental strand, 23718082 - 23718013
Alignment:
Q  370 caccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    ||||||||  ||||| |||| |||||||||||| ||||||||||||||| | | || |||||||||||||    
T  23718082 caccgacacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgt 23718013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 439
Target Start/End: Complemental strand, 24105754 - 24105685
Alignment:
Q  370 caccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    ||||||||  ||||| |||| |||||||||||| ||||||||||||||| | | || |||||||||||||    
T  24105754 caccgacacatataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgt 24105685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 439
Target Start/End: Original strand, 30527599 - 30527667
Alignment:
Q  371 accgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    |||||||  ||||| |||| | |||||| ||||||||||||||||||| ||| || |||||||||||||    
T  30527599 accgacacatataattacactaaattatatgattttctcaaattattaacagtgtgggtgtgtcagtgt 30527667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 420
Target Start/End: Complemental strand, 31026752 - 31026701
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattattatc 420  Q
    |||||||||| ||| | ||||||||||||||| ||||||| |||||||||||    
T  31026752 acaccgacatatatgattacattgaattatgtcattttcttaaattattatc 31026701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 419
Target Start/End: Original strand, 44605140 - 44605191
Alignment:
Q  368 aacaccgacatgtataactacattgaattatgtgattttctcaaattattat 419  Q
    ||||||||||  | ||| ||||||||||||||| ||||||||||||||||||    
T  44605140 aacaccgacacatgtaattacattgaattatgttattttctcaaattattat 44605191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 420
Target Start/End: Complemental strand, 18571012 - 18570978
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatc 420  Q
    ||||||||||||||| |||||||||||||||||||    
T  18571012 tacattgaattatgtcattttctcaaattattatc 18570978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 418
Target Start/End: Complemental strand, 21616808 - 21616770
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattatta 418  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  21616808 tataattacactgaattatgtgattttctcaaattatta 21616770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 420
Target Start/End: Complemental strand, 30563449 - 30563415
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatc 420  Q
    ||||||||||||||| |||||||||||||||||||    
T  30563449 tacattgaattatgtcattttctcaaattattatc 30563415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 418
Target Start/End: Complemental strand, 39026876 - 39026826
Alignment:
Q  368 aacaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    ||||||||||| ||||| |||||| || |||||||||||||||| ||||||    
T  39026876 aacaccgacatttataattacattaaaatatgtgattttctcaagttatta 39026826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 436
Target Start/End: Complemental strand, 39279735 - 39279665
Alignment:
Q  366 ccaacaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcag 436  Q
    ||||||||||||  ||||| |||| |||||||| ||||||||||| ||||||| | | ||||| |||||||    
T  39279735 ccaacaccgacacatataattacactgaattatttgattttctcatattattaacggtgttggcgtgtcag 39279665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 420
Target Start/End: Complemental strand, 40682022 - 40681988
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatc 420  Q
    ||||||||||||||| |||||||||||||||||||    
T  40682022 tacattgaattatgtcattttctcaaattattatc 40681988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 439
Target Start/End: Complemental strand, 896251 - 896198
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    ||||||||| ||||||||||||||||| ||||| ||| || || ||||||||||    
T  896251 tacattgaaatatgtgattttctcaaactattagcagtgtcggcgtgtcagtgt 896198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 2331839 - 2331802
Alignment:
Q  381 ataactacattgaattatgtgattttctcaaattatta 418  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  2331839 ataaatacactgaattatgtgattttctcaaattatta 2331802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 5367249 - 5367200
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  ||||| |||| ||||||||||||||| ||||||||||||    
T  5367249 acaccgacacatataattacactgaattatgtgatttcctcaaattatta 5367200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Original strand, 19613632 - 19613665
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattat 419  Q
    ||||||||||||||| ||||||||||||||||||    
T  19613632 tacattgaattatgttattttctcaaattattat 19613665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 439
Target Start/End: Complemental strand, 27084302 - 27084249
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    ||||||||||||| ||||||||||||||||||| ||| || || ||||| ||||    
T  27084302 tacattgaattatatgattttctcaaattattagcagtgtcggagtgtccgtgt 27084249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 44860377 - 44860328
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  ||||| |||| ||||||||| ||||||||||||||||||    
T  44860377 acaccgacacatataattacactgaattatgcgattttctcaaattatta 44860328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 439
Target Start/End: Complemental strand, 31808136 - 31808064
Alignment:
Q  367 caacaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    |||||| ||||  ||||| |||| |||||||||||||||| | ||||||||| | | || |||||||||||||    
T  31808136 caacactgacacatataattacactgaattatgtgattttgttaaattattagcggtgtcggtgtgtcagtgt 31808064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 6326754 - 6326686
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagt 437  Q
    |||||||||| ||||| |||||| | |||| ||||||| | ||||||||||||||||||||||||||||    
T  6326754 acaccgacatatataattacatttatttatatgatttttttaaattattatcagggttggtgtgtcagt 6326686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 445
Target Start/End: Complemental strand, 20549848 - 20549772
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgt 445  Q
    |||||||||  ||||| |||| ||||||| |||||||||||||||||||| | | || ||||||||||||| |||||    
T  20549848 acaccgacacatataattacactgaattacgtgattttctcaaattattagcggtgtcggtgtgtcagtgtatgtgt 20549772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 418
Target Start/End: Complemental strand, 21880271 - 21880160
Alignment:
Q  307 ctatgaagcacggacatttctctaaataagcatgtcctagtgtaggacatg-gtcggtttccaacaccgacatgtataactacattgaattatgtgattt 405  Q
    |||||||||||||||| |||||  | || || |||||| |||| ||||||| |||| | ||| |||||||||  | ||| |||| |||||||||| ||||    
T  21880271 ctatgaagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtcg-tgtccgacaccgacacttgtaattacactgaattatgtaattt 21880173  T
Q  406 tctcaaattatta 418  Q
    |||||||||||||    
T  21880172 tctcaaattatta 21880160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 439
Target Start/End: Original strand, 45056925 - 45056973
Alignment:
Q  391 tgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    |||||||||||||||||||||||||||| ||| ||||| ||||| ||||    
T  45056925 tgaattatgtgattttctcaaattattagcagtgttggagtgtccgtgt 45056973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 431
Target Start/End: Complemental strand, 12278881 - 12278830
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattatcagggttggtgt 431  Q
    ||||| |||| |||||||||| ||||||| ||||||||||||| ||||||||    
T  12278881 tataattacactgaattatgtcattttcttaaattattatcagtgttggtgt 12278830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 420
Target Start/End: Complemental strand, 44021040 - 44020981
Alignment:
Q  361 ggtttccaacaccgacatgtataactacattgaattatgtgattttctcaaattattatc 420  Q
    |||||||||||||||||  |||   ||||||||||||||| ||||| |||||||||||||    
T  44021040 ggtttccaacaccgacagatatggttacattgaattatgtaattttttcaaattattatc 44020981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 421
Target Start/End: Original strand, 44172909 - 44172944
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatca 421  Q
    ||||||||||||||| ||||||||||||||||||||    
T  44172909 tacattgaattatgtcattttctcaaattattatca 44172944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 420
Target Start/End: Original strand, 3520345 - 3520395
Alignment:
Q  370 caccgacatgtataactacattgaattatgtgattttctcaaattattatc 420  Q
    ||||||||  ||||| ||||||||||||| |||||||||||||| ||||||    
T  3520345 caccgacacatataattacattgaattatatgattttctcaaatgattatc 3520395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 422
Target Start/End: Complemental strand, 16341542 - 16341500
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattatcag 422  Q
    ||||| |||| | ||||||||||||||||||||||||||||||    
T  16341542 tataattacacttaattatgtgattttctcaaattattatcag 16341500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 420
Target Start/End: Original strand, 38134425 - 38134459
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatc 420  Q
    ||||||||||||||| |||||||||||||||||||    
T  38134425 tacattgaattatgtcattttctcaaattattatc 38134459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 458
Target Start/End: Complemental strand, 598265 - 598176
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtc 458  Q
    |||||||||  || || |||||| ||||| |||||||||| ||||||||| | | || | |||||||||||  |||| ||||||||||||    
T  598265 acaccgacacttacaattacatttaattacgtgattttcttaaattattagcggtgtcgatgtgtcagtgtccgtgtcatgtctggtgtc 598176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 2424659 - 2424622
Alignment:
Q  381 ataactacattgaattatgtgattttctcaaattatta 418  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  2424659 ataattacactgaattatgtgattttctcaaattatta 2424622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 7438763 - 7438714
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  | ||| ||||||||||||||||||||| |||||||||||    
T  7438763 acaccgacacttgtaattacattgaattatgtgattttttcaaattatta 7438714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 11700848 - 11700811
Alignment:
Q  381 ataactacattgaattatgtgattttctcaaattatta 418  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  11700848 ataattacattgaattatgtgattttgtcaaattatta 11700811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 19206107 - 19206058
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  ||||| || | ||||||||||||||||||||||||||||    
T  19206107 acaccgacacatataattataatgaattatgtgattttctcaaattatta 19206058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 19992058 - 19992009
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  ||||| |||| |||| |||||||||||||||||||||||    
T  19992058 acaccgacacttataattacactgaaatatgtgattttctcaaattatta 19992009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 24146873 - 24146824
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  ||||| || |||||||||||||||||||| |||||||||    
T  24146873 acaccgacacatataattatattgaattatgtgattttctaaaattatta 24146824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 29787383 - 29787420
Alignment:
Q  381 ataactacattgaattatgtgattttctcaaattatta 418  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  29787383 ataattacactgaattatgtgattttctcaaattatta 29787420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 439
Target Start/End: Complemental strand, 32308160 - 32308107
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    |||| |||||||||||||||||||||||||||| | | || || ||||||||||    
T  32308160 tacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgt 32308107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 419
Target Start/End: Complemental strand, 15902881 - 15902829
Alignment:
Q  367 caacaccgacatgtataactacattgaattatgtgattttctcaaattattat 419  Q
    |||||||||||  ||||| |||| | |||||||||||||| ||||||||||||    
T  15902881 caacaccgacacatataattacactaaattatgtgattttatcaaattattat 15902829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 422
Target Start/End: Original strand, 21247755 - 21247791
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatcag 422  Q
    |||||||||||| || |||||||||||||||||||||    
T  21247755 tacattgaattacgtcattttctcaaattattatcag 21247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 413
Target Start/End: Original strand, 22602712 - 22602756
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaat 413  Q
    |||||||||  ||||| |||| |||||||||||||||||||||||    
T  22602712 acaccgacacatataattacactgaattatgtgattttctcaaat 22602756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 445
Target Start/End: Complemental strand, 25791709 - 25791634
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgt 445  Q
    |||||||||  ||||||||||||| ||||||||| |||||||||| |||| | | || || |||||||||| |||||    
T  25791709 acaccgacacatataactacattg-attatgtgaatttctcaaataattagcggtgtcggcgtgtcagtgtctgtgt 25791634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 418
Target Start/End: Complemental strand, 35862004 - 35861972
Alignment:
Q  386 tacattgaattatgtgattttctcaaattatta 418  Q
    ||||||||||||||||||||| |||||||||||    
T  35862004 tacattgaattatgtgattttttcaaattatta 35861972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 422
Target Start/End: Complemental strand, 41360950 - 41360914
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatcag 422  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  41360950 tacattgaattatgttattttctcaaattaatatcag 41360914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 418
Target Start/End: Complemental strand, 30098381 - 30098334
Alignment:
Q  371 accgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||    
T  30098381 accgacatctataattacattgaattatgtgattttctcaaattatta 30098334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 22423814 - 22423863
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||| ||||| || ||||||||||||||||||||||||||||||    
T  22423814 acaccgacatatataattatattgaattatgtgattttctcaaattatta 22423863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 419
Target Start/End: Complemental strand, 9449509 - 9449476
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattat 419  Q
    ||||||||||||||||||||||||||||||||||    
T  9449509 tacattgaattatgtgattttctcaaattattat 9449476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 418
Target Start/End: Original strand, 23012406 - 23012459
Alignment:
Q  365 tccaacaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||||||  ||||| |||||| |||||| |||||||||||||||||||    
T  23012406 tccaacaccgacacatataattacattaaattatatgattttctcaaattatta 23012459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 28588676 - 28588725
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  ||||| |||| ||||||||||||||||||||||||||||    
T  28588676 acaccgacacctataattacactgaattatgtgattttctcaaattatta 28588725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 32428941 - 32428981
Alignment:
Q  382 taactacattgaattatgtgattttctcaaattattatcag 422  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  32428941 taactacattgaattatgtcactttctcaaattattatcag 32428981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 445
Target Start/End: Original strand, 24906320 - 24906379
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgt 445  Q
    |||| |||||||||| ||||| ||||||||||||| | ||||| ||||||||||| ||||    
T  24906320 tacactgaattatgtcattttttcaaattattatctgtgttggcgtgtcagtgttcgtgt 24906379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 418
Target Start/End: Original strand, 30502357 - 30502439
Alignment:
Q  336 gcatgtcctagtgtaggacatg-gtcggtttccaacaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||| ||||| ||||||| |||| | ||| |||||||||  ||||| |||| ||||||| ||||||||||||||||||||    
T  30502357 gcatgtcccagtgtcggacatgtgtcg-tgtccgacaccgacacatataattacactgaattaagtgattttctcaaattatta 30502439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 418
Target Start/End: Original strand, 30542700 - 30542782
Alignment:
Q  336 gcatgtcctagtgtaggacatg-gtcggtttccaacaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||| ||||| ||||||| |||| | ||| |||||||||  ||||| |||| ||||||| ||||||||||||||||||||    
T  30542700 gcatgtcccagtgtcggacatgtgtcg-tgtccgacaccgacacatataattacactgaattaagtgattttctcaaattatta 30542782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 418
Target Start/End: Original strand, 6471902 - 6471940
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattatta 418  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  6471902 tataattacactgaattatgtgattttctcaaattatta 6471940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 420
Target Start/End: Original strand, 11596474 - 11596508
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatc 420  Q
    ||||||||||||||| |||||||||||||||||||    
T  11596474 tacattgaattatgtcattttctcaaattattatc 11596508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 439
Target Start/End: Complemental strand, 17123109 - 17123035
Alignment:
Q  365 tccaacaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    |||||||||||||| ||||| |  | |  ||||||||||||||||||||||||| | | ||||| ||||||||||    
T  17123109 tccaacaccgacatatataattgtacttgattatgtgattttctcaaattattagcggtgttggcgtgtcagtgt 17123035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 419
Target Start/End: Original strand, 17925174 - 17925224
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattattat 419  Q
    |||||||||  ||| | ||||||||||||||||||||||| ||||||||||    
T  17925174 acaccgacacatattattacattgaattatgtgattttcttaaattattat 17925224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 420
Target Start/End: Original strand, 18607116 - 18607150
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatc 420  Q
    ||||||||||||||| |||||||||||||||||||    
T  18607116 tacattgaattatgttattttctcaaattattatc 18607150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 420
Target Start/End: Complemental strand, 28296368 - 28296334
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatc 420  Q
    ||||||||||||||| |||||||||||||||||||    
T  28296368 tacattgaattatgtcattttctcaaattattatc 28296334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 3966560 - 3966511
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  ||||| |||| |||||| |||||||||||||||||||||    
T  3966560 acaccgacacatataattacactgaattgtgtgattttctcaaattatta 3966511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 439
Target Start/End: Complemental strand, 31084363 - 31084310
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    ||||||||||||||||||||| ||||||||||| | | || || ||||||||||    
T  31084363 tacattgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 31084310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 420
Target Start/End: Original strand, 38749563 - 38749616
Alignment:
Q  367 caacaccgacatgtataactacattgaattatgtgattttctcaaattattatc 420  Q
    ||||||| |||  ||||| ||||||||||||||| ||||| |||||||||||||    
T  38749563 caacaccaacacatataattacattgaattatgtcattttttcaaattattatc 38749616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 435
Target Start/End: Original strand, 43208293 - 43208342
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtca 435  Q
    ||||||||||||||| |||||||||||||| |||| | |||| |||||||    
T  43208293 tacattgaattatgtcattttctcaaattactatcggtgttgatgtgtca 43208342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 420
Target Start/End: Original strand, 5467991 - 5468031
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattatc 420  Q
    ||||| |||| |||||||||||||||| |||||||||||||    
T  5467991 tataattacactgaattatgtgattttatcaaattattatc 5468031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 440
Target Start/End: Original strand, 7997179 - 7997239
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtt 440  Q
    ||||| |||| || ||||| | ||||||||||||||||||| | ||||| |||||||||||    
T  7997179 tataattacactgtattatatcattttctcaaattattatccgtgttggcgtgtcagtgtt 7997239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 17593725 - 17593773
Alignment:
Q  370 caccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||| |||| ||||| |||| ||||||| ||||||||||||||||||||    
T  17593725 caccaacatatataattacactgaattacgtgattttctcaaattatta 17593773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 420
Target Start/End: Original strand, 19737503 - 19737535
Alignment:
Q  388 cattgaattatgtgattttctcaaattattatc 420  Q
    ||||||||||||| |||||||||||||||||||    
T  19737503 cattgaattatgtaattttctcaaattattatc 19737535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 420
Target Start/End: Original strand, 32630748 - 32630788
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattatc 420  Q
    ||||| ||||||||||||| | |||||||||||||||||||    
T  32630748 tataattacattgaattatataattttctcaaattattatc 32630788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 439
Target Start/End: Complemental strand, 6427396 - 6427337
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    ||||| ||||||||||||||||||||||||||||||||| | | ||||| ||||||||||    
T  6427396 tataattacattgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgt 6427337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 439
Target Start/End: Original strand, 2896123 - 2896193
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    |||||||||| |||| ||||| |||||||||||||||||||||||||||| | | || || ||||||||||    
T  2896123 acaccgacatatatagctacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgt 2896193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 418
Target Start/End: Original strand, 1864878 - 1864931
Alignment:
Q  365 tccaacaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||||||  ||||| |||| ||||||||||||||||||||||||||||    
T  1864878 tccaacaccgacacatataattacactgaattatgtgattttctcaaattatta 1864931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 439
Target Start/End: Original strand, 40285671 - 40285726
Alignment:
Q  384 actacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    |||||| ||||||||| |||||||||||||||||| | | ||||||||||||||||    
T  40285671 actacactgaattatgcgattttctcaaattattagcggtgttggtgtgtcagtgt 40285726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 439
Target Start/End: Complemental strand, 36878518 - 36878448
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    |||||||||  ||||| |||| |||||||||||||||||||||||||||| | | || || ||||||||||    
T  36878518 acaccgacacctataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgt 36878448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 448
Target Start/End: Original strand, 9449032 - 9449089
Alignment:
Q  391 tgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttat 448  Q
    |||||||||||||||| |||||||||||   | ||||||||||| |||||||||||||    
T  9449032 tgaattatgtgattttttcaaattattaatggtgttggtgtgtctgtgtttgtgttat 9449089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 420
Target Start/End: Original strand, 17425106 - 17425146
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattatc 420  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  17425106 tataattacattgaattatgtgattttatcaaattattatc 17425146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 439
Target Start/End: Complemental strand, 36906032 - 36905984
Alignment:
Q  391 tgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    |||||||||||||||||||| ||||||| | | ||||||||||||||||    
T  36906032 tgaattatgtgattttctcagattattagcggtgttggtgtgtcagtgt 36905984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 420
Target Start/End: Original strand, 40747786 - 40747826
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattatc 420  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  40747786 tataattacattgaattatgtcattttctcaaattattatc 40747826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 434
Target Start/End: Complemental strand, 42325600 - 42325552
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtc 434  Q
    |||| |||||||||| ||||||||||||||||||| | |||||||||||    
T  42325600 tacactgaattatgtcattttctcaaattattatcggtgttggtgtgtc 42325552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 445
Target Start/End: Original strand, 27471585 - 27471644
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgt 445  Q
    |||| ||||||||||| |||||||||||||||| | |  | |||||||||||||||||||    
T  27471585 tacactgaattatgtgcttttctcaaattattagcggtatcggtgtgtcagtgtttgtgt 27471644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 418
Target Start/End: Complemental strand, 34298483 - 34298444
Alignment:
Q  379 gtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  34298483 gtataattacactgaattatgtgattttctcaaattatta 34298444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 416
Target Start/End: Complemental strand, 44482287 - 44482240
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattat 416  Q
    |||||||||  ||||| |||| ||||||||||||||||||||||||||    
T  44482287 acaccgacacatataattacactgaattatgtgattttctcaaattat 44482240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 419
Target Start/End: Original strand, 2288181 - 2288219
Alignment:
Q  381 ataactacattgaattatgtgattttctcaaattattat 419  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  2288181 ataattacattgaattatgtgattttcttaaattattat 2288219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 418
Target Start/End: Original strand, 7918224 - 7918262
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattatta 418  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  7918224 tataattacactgaattatgtgattttctcaaattatta 7918262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 420
Target Start/End: Complemental strand, 11571625 - 11571591
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatc 420  Q
    ||||||||||||||| |||||||||||||||||||    
T  11571625 tacattgaattatgtcattttctcaaattattatc 11571591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 418
Target Start/End: Complemental strand, 40181917 - 40181879
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattatta 418  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  40181917 tataattacactgaattatgtgattttctcaaattatta 40181879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 427
Target Start/End: Original strand, 41017406 - 41017464
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttg 427  Q
    ||||| |||| ||||| |||||| |||||||| |||||||||||||||||  |||||||    
T  41017406 acaccaacatatataattacattaaattatgtcattttctcaaattattactagggttg 41017464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 418
Target Start/End: Complemental strand, 1262921 - 1262892
Alignment:
Q  389 attgaattatgtgattttctcaaattatta 418  Q
    ||||||||||||||||||||||||||||||    
T  1262921 attgaattatgtgattttctcaaattatta 1262892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 1486711 - 1486760
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  ||||| |||| |||||||||||||||| |||||||||||    
T  1486711 acaccgacacttataattacactgaattatgtgattttttcaaattatta 1486760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Complemental strand, 3921707 - 3921674
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattat 419  Q
    ||||||||||||||| ||||||||||||||||||    
T  3921707 tacattgaattatgtcattttctcaaattattat 3921674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 9709877 - 9709828
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  ||||| ||||  |||||||||||||||||||||||||||    
T  9709877 acaccgacacatataattacaacgaattatgtgattttctcaaattatta 9709828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 420
Target Start/End: Original strand, 11412736 - 11412821
Alignment:
Q  336 gcatgtcctagtgtaggacatg-gtcggtttccaacaccgacatgtataactacattgaattatgtgattttctcaaattattatc 420  Q
    |||||||||||||| |||||   || ||| |||||||||||||  ||| |  |||||||||||||| ||||||||| |||||||||    
T  11412736 gcatgtcctagtgtcggacacatgttggtgtccaacaccgacacctatgatcacattgaattatgtcattttctcatattattatc 11412821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 445
Target Start/End: Original strand, 19562634 - 19562699
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgt 445  Q
    ||||| |||| |||| |||| |||||||||||||||||| ||| || || ||||||||||| ||||    
T  19562634 tataattacactgaactatgagattttctcaaattattagcagtgtcggcgtgtcagtgttcgtgt 19562699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 38078663 - 38078712
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  | ||| ||||||||||||||||||||| |||||||||||    
T  38078663 acaccgacacttgtaattacattgaattatgtgattttttcaaattatta 38078712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 46914043 - 46914084
Alignment:
Q  371 accgacatgtataactacattgaattatgtgattttctcaaa 412  Q
    |||||||| ||||| ||||||||||||||| |||||||||||    
T  46914043 accgacatttataattacattgaattatgttattttctcaaa 46914084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 420
Target Start/End: Original strand, 351105 - 351137
Alignment:
Q  388 cattgaattatgtgattttctcaaattattatc 420  Q
    ||||||||||||||||||| |||||||||||||    
T  351105 cattgaattatgtgattttatcaaattattatc 351137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 434
Target Start/End: Complemental strand, 10233313 - 10233245
Alignment:
Q  366 ccaacaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtc 434  Q
    ||||||| ||||  ||||| |||| ||||||||||||||||||||| ||||||   | |||||||||||    
T  10233313 ccaacacagacacatataattacactgaattatgtgattttctcaatttattagtggtgttggtgtgtc 10233245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 418
Target Start/End: Original strand, 12443479 - 12443511
Alignment:
Q  386 tacattgaattatgtgattttctcaaattatta 418  Q
    |||| ||||||||||||||||||||||||||||    
T  12443479 tacactgaattatgtgattttctcaaattatta 12443511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 439
Target Start/End: Complemental strand, 16812578 - 16812530
Alignment:
Q  391 tgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    |||||||||||||||| ||||||||||||  | || |||||||||||||    
T  16812578 tgaattatgtgattttgtcaaattattattggtgtcggtgtgtcagtgt 16812530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 19324608 - 19324572
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattat 416  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  19324608 tataattacactgaattatgtgattttctcaaattat 19324572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 416
Target Start/End: Original strand, 25098568 - 25098604
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattat 416  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  25098568 tataattacactgaattatgtgattttctcaaattat 25098604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 25361932 - 25361896
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattat 416  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  25361932 tataattacactgaattatgtgattttctcaaattat 25361896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 418
Target Start/End: Complemental strand, 31015083 - 31015051
Alignment:
Q  386 tacattgaattatgtgattttctcaaattatta 418  Q
    |||| ||||||||||||||||||||||||||||    
T  31015083 tacactgaattatgtgattttctcaaattatta 31015051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 420
Target Start/End: Original strand, 48785281 - 48785317
Alignment:
Q  384 actacattgaattatgtgattttctcaaattattatc 420  Q
    |||| |||||||||||| |||||||||||||||||||    
T  48785281 actatattgaattatgttattttctcaaattattatc 48785317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 419
Target Start/End: Complemental strand, 12985449 - 12985399
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattattat 419  Q
    |||||||||| ||| | ||||||||||||||||||||||||||||||||||    
T  12985449 acaccgacatatatgattacattgaattatgtgattttctcaaattattat 12985399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 14134756 - 14134707
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||| ||||| |||| ||||||||||||||||||||||||||||    
T  14134756 acaccgacatatataattacactgaattatgtgattttctcaaattatta 14134707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 7314050 - 7314094
Alignment:
Q  14 ttagtgaacaaattaatcatgt-agtttcagcaatacctgattga 57  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  7314050 ttagtgaacaaattaatcatgttagtttcagcaatacctgattga 7314094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 31236580 - 31236628
Alignment:
Q  370 caccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    ||||||||  ||||| |||||||||||||||||||||||||||||||||    
T  31236580 caccgacacatataattacattgaattatgtgattttctcaaattatta 31236628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 418
Target Start/End: Complemental strand, 7658524 - 7658471
Alignment:
Q  365 tccaacaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||||||  ||||| |||| |||||||||| |||||||||||||||||    
T  7658524 tccaacaccgacaaatataattacactgaattatgtaattttctcaaattatta 7658471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 12606831 - 12606880
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  ||||| ||||||||||||| |||||||||||||||||||    
T  12606831 acaccgacacatataattacattgaattatatgattttctcaaattatta 12606880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 422
Target Start/End: Complemental strand, 3508092 - 3508056
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatcag 422  Q
    ||||||||||||||| |||||||||||||||||||||    
T  3508092 tacattgaattatgttattttctcaaattattatcag 3508056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 418
Target Start/End: Original strand, 29447129 - 29447161
Alignment:
Q  386 tacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||||||||||||||||||||||||||    
T  29447129 tacattgaattatgtgattttctcaaattatta 29447161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 419
Target Start/End: Original strand, 34201059 - 34201098
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattat 419  Q
    ||||| ||||||||||||||| ||||||||||||||||||    
T  34201059 tataattacattgaattatgtcattttctcaaattattat 34201098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 418
Target Start/End: Complemental strand, 3025597 - 3025559
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattatta 418  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  3025597 tataattacactgaattatgtgattttctcaaattatta 3025559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 445
Target Start/End: Complemental strand, 11803318 - 11803240
Alignment:
Q  367 caacaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgt 445  Q
    ||||||| |||  ||||| |||| |||||||||||||||||| ||||||||| ||| ||  |||| |||||||| ||||    
T  11803318 caacaccaacacatataattacactgaattatgtgattttcttaaattattaacagtgtcagtgtatcagtgttcgtgt 11803240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 439
Target Start/End: Original strand, 13844598 - 13844668
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    |||||||||  ||||| |||| | |||||||||||||||||||||||||| ||| || || ||||| ||||    
T  13844598 acaccgacacatataattacactcaattatgtgattttctcaaattattagcagtgtcggcgtgtccgtgt 13844668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 439
Target Start/End: Original strand, 33405386 - 33405456
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    |||||||||  ||||| |||| | ||||||||| |||||||||||||||| |||||   ||||||||||||    
T  33405386 acaccgacacatataattacactaaattatgtgtttttctcaaattattaacagggccagtgtgtcagtgt 33405456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 418
Target Start/End: Complemental strand, 34897131 - 34897093
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattatta 418  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  34897131 tataattacactgaattatgtgattttctcaaattatta 34897093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 458
Target Start/End: Complemental strand, 44067562 - 44067484
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtc 458  Q
    ||||| |||| || ||||||| ||||||||||||||||||| | || || ||||||||||  ||||  |||||||||||    
T  44067562 tataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtcggtgtggtgtctggtgtc 44067484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 4786340 - 4786389
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  ||||| |||| |||||||||||||||||| |||||||||    
T  4786340 acaccgacacatataattacactgaattatgtgattttcttaaattatta 4786389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 11927088 - 11927137
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  ||||| |||| |||||||||||||||| |||||||||||    
T  11927088 acaccgacacatataattacactgaattatgtgattttatcaaattatta 11927137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Complemental strand, 14227262 - 14227229
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattat 419  Q
    ||||||||||||||| ||||||||||||||||||    
T  14227262 tacattgaattatgttattttctcaaattattat 14227229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 20679397 - 20679446
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  ||||| |||| |||| |||||||||||||||||||||||    
T  20679397 acaccgacacttataattacactgaactatgtgattttctcaaattatta 20679446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 418
Target Start/End: Complemental strand, 26434241 - 26434188
Alignment:
Q  365 tccaacaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||||||  | ||| || |||||||||||||||||||||||| |||||    
T  26434241 tccaacaccgacacttttaattatattgaattatgtgattttctcaaactatta 26434188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Original strand, 37225762 - 37225795
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattat 419  Q
    ||||||||||||||| ||||||||||||||||||    
T  37225762 tacattgaattatgttattttctcaaattattat 37225795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 418
Target Start/End: Original strand, 38278173 - 38278226
Alignment:
Q  365 tccaacaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    ||||||||||| | |||||| || ||| |||||||||||||||| |||||||||    
T  38278173 tccaacaccgatacgtataattatattaaattatgtgattttcttaaattatta 38278226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 418
Target Start/End: Original strand, 29198498 - 29198530
Alignment:
Q  386 tacattgaattatgtgattttctcaaattatta 418  Q
    ||||||||||||||| |||||||||||||||||    
T  29198498 tacattgaattatgtcattttctcaaattatta 29198530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 420
Target Start/End: Original strand, 34739078 - 34739114
Alignment:
Q  384 actacattgaattatgtgattttctcaaattattatc 420  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  34739078 actacattgaattatgtcattttctcatattattatc 34739114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 417
Target Start/End: Complemental strand, 40332248 - 40332200
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatt 417  Q
    |||||||||  | ||| |||| |||||||||||||||||||||||||||    
T  40332248 acaccgacacttgtaattacactgaattatgtgattttctcaaattatt 40332200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 445
Target Start/End: Complemental strand, 90896 - 90824
Alignment:
Q  373 cgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgt 445  Q
    |||||| ||||| |||| |||||||| |||||||||||||||||||   | |||||||||||||||| |||||    
T  90896 cgacatatataattacactgaattatatgattttctcaaattattaatggtgttggtgtgtcagtgtctgtgt 90824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 420
Target Start/End: Complemental strand, 99939 - 99899
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattatc 420  Q
    ||||| ||||||||||||||| ||||||| |||||||||||    
T  99939 tataattacattgaattatgttattttctaaaattattatc 99899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 420
Target Start/End: Original strand, 15304569 - 15304656
Alignment:
Q  334 aagcatgtcctagtgtaggacatg-gtcggtttccaacaccgacatgtataactacattgaattatgtgattttctcaaattattatc 420  Q
    ||||||||| |||||| ||||| | |||||| ||| |||||||||  ||||||||||||||| |||||  |||||| |||||||||||    
T  15304569 aagcatgtcatagtgttggacacgcgtcggtatccgacaccgacacatataactacattgaaatatgttgttttctaaaattattatc 15304656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 418
Target Start/End: Complemental strand, 9624687 - 9624649
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattatta 418  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  9624687 tataattacattgaattatgtgattttctcaaattatta 9624649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 451
Target Start/End: Complemental strand, 13807206 - 13807144
Alignment:
Q  389 attgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtc 451  Q
    |||||||||||||||||||||||||| ||||||| ||||| |||| ||| || |||| |||||    
T  13807206 attgaattatgtgattttctcaaattgttatcagtgttggcgtgttagttttcgtgtcatgtc 13807144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 457
Target Start/End: Original strand, 25652044 - 25652121
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgt 457  Q
    |||||||||| |||||||| | ||||||||||||||||||| | ||||| |||| |||||  ||||  ||||||||||    
T  25652044 tataactacactgaattatatcattttctcaaattattatccgtgttggcgtgttagtgtccgtgtcgtgtctggtgt 25652121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 458
Target Start/End: Complemental strand, 11610565 - 11610489
Alignment:
Q  382 taactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtc 458  Q
    |||||||| |||||||||||||||| | ||||||||| | | ||||| |||||||| | |||||| |||||| ||||    
T  11610565 taactacactgaattatgtgatttttttaaattattagcggtgttggcgtgtcagtatctgtgttgtgtctgatgtc 11610489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 458
Target Start/End: Original strand, 4466613 - 4466691
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtc 458  Q
    |||| ||||| |||||||| ||||||||| ||||||||| | | || || ||||||||||| |||| ||||| ||||||    
T  4466613 tatagctacactgaattatatgattttcttaaattattaccggtgtcggagtgtcagtgttcgtgtcatgtccggtgtc 4466691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 445
Target Start/End: Complemental strand, 11658850 - 11658796
Alignment:
Q  391 tgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgt 445  Q
    ||||||||| |||||||||||||||||| |   |||||||||||||||| |||||    
T  11658850 tgaattatgcgattttctcaaattattaacgatgttggtgtgtcagtgtctgtgt 11658796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 439
Target Start/End: Complemental strand, 39002089 - 39002019
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    |||| ||||| ||||| ||||||||||||||||||||| |||||||  ||||   || |||||||||||||    
T  39002089 acactgacatatataattacattgaattatgtgattttttcaaattcctatccatgtcggtgtgtcagtgt 39002019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 420
Target Start/End: Complemental strand, 52369815 - 52369781
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattatc 420  Q
    ||||||||||||||| |||||||||||||||||||    
T  52369815 tacattgaattatgtaattttctcaaattattatc 52369781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 7614417 - 7614466
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||| ||||| || | |||||||||||||||||| |||||||||    
T  7614417 acaccgacatatataattatactgaattatgtgattttcttaaattatta 7614466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 7928507 - 7928458
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  ||||| |||| |||||||||||||||| |||||||||||    
T  7928507 acaccgacacatataattacactgaattatgtgattttttcaaattatta 7928458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 8383314 - 8383265
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  ||||| |||| |||||||| |||||||||||||||||||    
T  8383314 acaccgacacttataattacactgaattatatgattttctcaaattatta 8383265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 11252023 - 11251986
Alignment:
Q  381 ataactacattgaattatgtgattttctcaaattatta 418  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  11252023 ataattacactgaattatgtgattttctcaaattatta 11251986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 459
Target Start/End: Original strand, 12674528 - 12674593
Alignment:
Q  394 attatgtgattttctcaaattattatcagggttggtgtgtcagtgtttgtgttatgtctggtgtct 459  Q
    ||||| ||||||||||||||||||| ||| || ||||||||| |||  ||||  ||||||||||||    
T  12674528 attatttgattttctcaaattattagcagtgtcggtgtgtcaatgtccgtgtcgtgtctggtgtct 12674593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 415
Target Start/End: Complemental strand, 12704085 - 12704056
Alignment:
Q  386 tacattgaattatgtgattttctcaaatta 415  Q
    ||||||||||||||||||||||||||||||    
T  12704085 tacattgaattatgtgattttctcaaatta 12704056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 422
Target Start/End: Complemental strand, 20691376 - 20691323
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcag 422  Q
    |||||||||  ||| | |||| |||||||||| |||||||||||||||||||||    
T  20691376 acaccgacacatatgattacactgaattatgtcattttctcaaattattatcag 20691323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 418
Target Start/End: Original strand, 24633399 - 24633452
Alignment:
Q  365 tccaacaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||||||  ||||| |||||||||||| ||||||||  ||||||||||    
T  24633399 tccaacaccgacacatataattacattgaattacgtgatttttccaaattatta 24633452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 38731275 - 38731226
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  |||||||||| |||||||||||||||| | |||||||||    
T  38731275 acaccgacacatataactacactgaattatgtgattttttaaaattatta 38731226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Original strand, 46191364 - 46191397
Alignment:
Q  386 tacattgaattatgtgattttctcaaattattat 419  Q
    |||||| |||||||||||||||||||||||||||    
T  46191364 tacatttaattatgtgattttctcaaattattat 46191397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 47362619 - 47362570
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||| ||||||||||| |||||| |||||||| ||||||| |||||||||    
T  47362619 acactgacatgtataattacattcaattatgtaattttcttaaattatta 47362570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 418
Target Start/End: Complemental strand, 5339148 - 5339116
Alignment:
Q  386 tacattgaattatgtgattttctcaaattatta 418  Q
    |||||| ||||||||||||||||||||||||||    
T  5339148 tacattaaattatgtgattttctcaaattatta 5339116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 420
Target Start/End: Original strand, 9210846 - 9210878
Alignment:
Q  388 cattgaattatgtgattttctcaaattattatc 420  Q
    ||||||||||||| |||||||||||||||||||    
T  9210846 cattgaattatgtcattttctcaaattattatc 9210878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 439
Target Start/End: Original strand, 17005619 - 17005691
Alignment:
Q  367 caacaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    |||||||||||  ||||| |||| |||||||| ||||||| |||||||||||   | ||||||| ||||||||    
T  17005619 caacaccgacacttataattacactgaattatatgattttatcaaattattagtggtgttggtgagtcagtgt 17005691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 418
Target Start/End: Complemental strand, 26439 - 26401
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  26439 tataacgacattgaattatgtgattttctcaaattatta 26401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 433
Target Start/End: Original strand, 135314 - 135378
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattattatcagggttggtgtgt 433  Q
    |||||||||  ||||| ||||  ||||||||||||||||||||||||||| ||| || |||||||    
T  135314 acaccgacacatataattacacagaattatgtgattttctcaaattattagcagtgtcggtgtgt 135378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 418
Target Start/End: Complemental strand, 28909 - 28858
Alignment:
Q  367 caacaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||||  ||||| |||||||||||||| |||||||| |||||||||    
T  28909 caacaccgacacatataattacattgaattatgcgattttcttaaattatta 28858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 417
Target Start/End: Complemental strand, 53236 - 53189
Alignment:
Q  370 caccgacatgtataactacattgaattatgtgattttctcaaattatt 417  Q
    ||||||||  ||||| |||| |||||||||||||||||||||||||||    
T  53236 caccgacacttataattacactgaattatgtgattttctcaaattatt 53189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 439
Target Start/End: Original strand, 225281 - 225340
Alignment:
Q  380 tataactacattgaattatgtgattttctcaaattattatcagggttggtgtgtcagtgt 439  Q
    ||||| ||||||| ||||||| ||||||||||||||||||| | || || ||||||||||    
T  225281 tataattacattgtattatgtcattttctcaaattattatctgtgtcggcgtgtcagtgt 225340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 422
Target Start/End: Complemental strand, 7728 - 7694
Alignment:
Q  388 cattgaattatgtgattttctcaaattattatcag 422  Q
    ||||||||||||| |||||||||||||||||||||    
T  7728 cattgaattatgtcattttctcaaattattatcag 7694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 9749 - 9798
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||  ||||| |||| ||||||| ||||||||||||||||||||    
T  9749 acaccgacacatataattacactgaattaagtgattttctcaaattatta 9798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 46739 - 46690
Alignment:
Q  369 acaccgacatgtataactacattgaattatgtgattttctcaaattatta 418  Q
    |||||||||| | ||| |||| |||||||||||||||| |||||||||||    
T  46739 acaccgacatttgtaattacactgaattatgtgattttttcaaattatta 46690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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