View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_47 (Length: 464)
Name: NF1271_low_47
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 29 - 443
Target Start/End: Complemental strand, 4616258 - 4615832
Alignment:
| Q |
29 |
actaaaatcataacacgggcttgcacatgttttaagtcttaagaaagtaaagacatattttggtcaaaaaataaaatgtcttagaaaggtgtgaaagaga |
128 |
Q |
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| T |
4616258 |
actaaaatcataacaagggcttgcacatgttttaggtctta-gaaaggaaaggcatgttttggtcaaaaaataaaatgtcttggaaaggcatgaaagaga |
4616160 |
T |
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| Q |
129 |
ataatcggcaacatatgacaaagttaatcaaatcactgcagatgttagaattcaaacgtccactagtagtagtagatatacgttatgaagatactgatac |
228 |
Q |
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| T |
4616159 |
ataattggcaatatatgacaaagttaatcaaatcactgcagatgttagaattcaaacgtccactaatagtagtagatatacgttatgaagatgctgatac |
4616060 |
T |
|
| Q |
229 |
agaagagcttgtgtttaagatgttttgccagtgtccttttttaatgttatttatttctagtgttagcaatatattttgccattctattttgttttcttga |
328 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4616059 |
agaagagcttgtgtttaagatgttttgccggtgttcttttttaatgttatttatttctagtgttagcaatatattttgccattctattttgttttcttga |
4615960 |
T |
|
| Q |
329 |
acaagaaatgagggtgaattaatgaaatttgcttcattgtattgagacaaaat---tta----------catgatacacatttacaatttagaatgataa |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
4615959 |
acaagaaatgagggtgaattaatgaaatttgcttcattgtattgagacaaaatcacttaaaaaatttggaatgatacacatttacaatttagaatgataa |
4615860 |
T |
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| Q |
416 |
gcagtttctcaggttttggggggttgct |
443 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
4615859 |
gcagtttctcaggttttggggggttgct |
4615832 |
T |
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