View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_50 (Length: 460)

Name: NF1271_low_50
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_50
NF1271_low_50
[»] chr1 (10 HSPs)
chr1 (6-432)||(47712866-47713292)
chr1 (27-432)||(47759802-47760207)
chr1 (21-432)||(47717684-47718086)
chr1 (27-432)||(47745479-47745875)
chr1 (394-431)||(6523731-6523768)
chr1 (27-79)||(47704889-47704941)
chr1 (357-432)||(47778046-47778127)
chr1 (355-429)||(6521731-6521811)
chr1 (139-180)||(47811738-47811779)
chr1 (139-179)||(6521987-6522027)
[»] chr5 (2 HSPs)
chr5 (355-428)||(28875835-28875908)
chr5 (27-72)||(28830931-28830976)


Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 6 - 432
Target Start/End: Original strand, 47712866 - 47713292
Alignment:
Q  6 aggagcagagaagcgatagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatata 105  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47712866 aggatcagagaagcgatagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatata 47712965  T
Q  106 gcaaactctaaacaatcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47712966 gcaaactctaaacaatcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcat 47713065  T
Q  206 tatccgcagcaaacttaagacgagaatcacttgatgcagctatttcttttagtttcctcatcaagtttccaagaactcgattaaatagatccacctcggt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  47713066 tatccgcagcaaacttaagacgagaatcacttgatgcagctatttctctcagtttcctcatcaagtttccaagaactcgattaaatggatccacctcggt 47713165  T
Q  306 tacattgttcgggttcgacatataaaactttggtgaccattcaagaatgccaaatattgatcggtttgagtaacgcaacatgtagtcctcataccaacca 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47713166 tacattgttcgggttcgacatataaaactttggtgaccattcaagaatgccaaatattgattggtttgagtaacgcaacatgtagtcctcataccaacca 47713265  T
Q  406 attgcttctttttggtttggacaaagt 432  Q
    |||||||||||||||||||||||||||    
T  47713266 attgcttctttttggtttggacaaagt 47713292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 27 - 432
Target Start/End: Original strand, 47759802 - 47760207
Alignment:
Q  27 ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaatcattg 126  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||||||||||| |||  || ||||||| ||||| ||||||   |||||||||| ||||    
T  47759802 ttcatatctgatattacaacttggtttgagaactctaccaccaatcttgttattacaacaacttggaatatctgagatagcaccatctaaacaattattg 47759901  T
Q  127 caatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaacttaagac 226  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| ||| |||    
T  47759902 caatcttgctctgacaaatcaggtgtgcactgaacaagaccatatatggtttgaaaattcaaatttacatcagttgcattatctgtagcaaatttacgac 47760001  T
Q  227 gagaatcacttgatgcagctatttcttttagtttcctcatcaagtttccaagaactcgattaaatagatccacctcggttacattgttcgggttcgacat 326  Q
    |||||||||||||||||||| | ||||| ||||||||||||||||| ||||||||| | |||||| |||||||||| |||||||| |    |||| ||||    
T  47760002 gagaatcacttgatgcagctttctctttcagtttcctcatcaagttcccaagaacttggttaaattgatccacctctgttacattatatatgttccacat 47760101  T
Q  327 ataaaactttggtgaccattcaagaatgccaaatattgatcggtttgagtaacgcaacatgtagtcctcataccaaccaattgcttctttttggtttgga 426  Q
    ||||||||||||||| | ||| | || ||| |||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||    
T  47760102 ataaaactttggtgaaccttccataacgccgaatattgatcggtttgagtaacgcaacatgcagttatcataccaaccaattgcttctttttggtttgga 47760201  T
Q  427 caaagt 432  Q
    ||||||    
T  47760202 caaagt 47760207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 21 - 432
Target Start/End: Original strand, 47717684 - 47718086
Alignment:
Q  21 atagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaa 120  Q
    ||||| ||||| ||||||||| ||||||||||||| |||| |||  |||| |||||||| | | ||||| ||||||||||| ||||||  ||||||||||    
T  47717684 atagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctgaaatagcacgctctaaacaa 47717783  T
Q  121 tcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaact 220  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||| |||||||||         |||||||||| | | ||||||||    
T  47717784 tcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaa---------agttgcattagcggtagcaaact 47717874  T
Q  221 taagacgagaatcacttgatgcagctatttcttttagtttcctcatcaagtttccaagaactcgattaaatagatccacctcggttacattgttcgggtt 320  Q
    || ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |||||||| |||||||||||||| |||| |||  | |    
T  47717875 tacgacgagaatcacttgatgctgctatttctttgagtttcctcatcaagttcccaagaacttgattaaattgatccacctcggttgcatttttcaaggt 47717974  T
Q  321 cgacatataaaactttggtgaccattcaagaatgccaaatattgatcggtttgagtaacgcaacatgtagtcctcataccaaccaattgcttctttttgg 420  Q
    | || |  || |    |||||   ||| | || ||| |||||||||||||||||||||||||||||| ||||  ||||||||||||| ||||||||||||    
T  47717975 ccactttaaatatgaaggtgaagcttccataacgccgaatattgatcggtttgagtaacgcaacatgcagtcaacataccaaccaatcgcttctttttgg 47718074  T
Q  421 tttggacaaagt 432  Q
    ||||||||||||    
T  47718075 tttggacaaagt 47718086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 27 - 432
Target Start/End: Original strand, 47745479 - 47745875
Alignment:
Q  27 ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaatcattg 126  Q
    |||||||||||||||||||||| |||||| |||||||| |||||||||||||||| |  || ||||| ||||||| ||||||  ||||||||||||||||    
T  47745479 ttcatatctaatattacaacttagtttgagaactctaccaccaatcttgttataaaaaaaacttggagtttctgaaatagcacgctctaaacaatcattg 47745578  T
Q  127 caatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaacttaagac 226  Q
    ||||||||  ||||||| |||||||||||||||||||||||||||||||||| |||||||||         |||||||||| | | |||||||||| |||    
T  47745579 caatcttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttcaaaattcaa---------agttgcattagcggtagcaaacttacgac 47745669  T
Q  227 gagaatcacttgatgcagctatttcttttagtttcctcatcaagtttccaagaactcgattaaatagatccacctcggttacattgttcgggttcgacat 326  Q
    ||||||||| ||||||||||||||| || ||||||||||||||||| ||||||||| |||||||| || |||| |||||||||||  |   |||| || |    
T  47745670 gagaatcacctgatgcagctatttcattgagtttcctcatcaagttcccaagaacttgattaaattgagccacatcggttacatttctattgttccactt 47745769  T
Q  327 ataaaactttggtgaccattcaagaatgccaaatattgatcggtttgagtaacgcaacatgtagtcctcataccaaccaattgcttctttttggtttgga 426  Q
    |||| |      |||    || | ||||||||||||||||||||||||||||||||||||| |||  |||||||||| |||||||||||||||| |||||    
T  47745770 ataatatgaaaatgaagtatccataatgccaaatattgatcggtttgagtaacgcaacatgcagttatcataccaactaattgcttctttttgggttgga 47745869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 431
Target Start/End: Complemental strand, 6523768 - 6523731
Alignment:
Q  394 tcataccaaccaattgcttctttttggtttggacaaag 431  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6523768 tcataccaaccaattgcttctttttggtttggacaaag 6523731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 47704889 - 47704941
Alignment:
Q  27 ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttat 79  Q
    ||||||||||||||| ||||||||||||| |||||| | ||||||||||||||    
T  47704889 ttcatatctaatattgcaacttggtttgataactcttccaccaatcttgttat 47704941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 432
Target Start/End: Complemental strand, 47778127 - 47778046
Alignment:
Q  357 aaatattgatcggtttgagtaacgcaacatgtagt------cctcataccaaccaattgcttctttttggtttggacaaagt 432  Q
    ||||||||| |||| |||||||||||||||| | |      |||| ||||||||||||||||| |||| |||||||||||||    
T  47778127 aaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttcctttttgtttggacaaagt 47778046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 429
Target Start/End: Complemental strand, 6521811 - 6521731
Alignment:
Q  355 ccaaatattgatcggtttgagtaacgcaacatgtagtcctca------taccaaccaattgcttctttttggtttggacaa 429  Q
    ||||||||||| ||||||||||||||||||||| | || |||      ||||| ||||||||||||||| ||||| |||||    
T  6521811 ccaaatattgaacggtttgagtaacgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaa 6521731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 47811779 - 47811738
Alignment:
Q  139 gacaaatcaggtgtacactgcacaagaccatatatggtttga 180  Q
    |||||||||||||||||||| |||||||||| ||| ||||||    
T  47811779 gacaaatcaggtgtacactgaacaagaccatttattgtttga 47811738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 6522027 - 6521987
Alignment:
Q  139 gacaaatcaggtgtacactgcacaagaccatatatggtttg 179  Q
    |||||||||||||| || || ||||||||||||||||||||    
T  6522027 gacaaatcaggtgtgcattgaacaagaccatatatggtttg 6521987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 428
Target Start/End: Original strand, 28875835 - 28875908
Alignment:
Q  355 ccaaatattgatcggtttgagtaacgcaacatgtagtcctcataccaaccaattgcttctttttggtttggaca 428  Q
    ||||||||||| ||| |||||||||||| |||| |||  |||  ||||||||||||||||||| ||| ||||||    
T  28875835 ccaaatattgaccggcttgagtaacgcagcatgcagttgtcaatccaaccaattgcttcttttcggtatggaca 28875908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 28830931 - 28830976
Alignment:
Q  27 ttcatatctaatattacaacttggtttgacaactctacaaccaatc 72  Q
    ||||||||||||||||||||||||||| | |||||||  |||||||    
T  28830931 ttcatatctaatattacaacttggtttcataactctagcaccaatc 28830976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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