View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_51 (Length: 452)
Name: NF1271_low_51
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 8e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 48 - 188
Target Start/End: Original strand, 38879551 - 38879691
Alignment:
| Q |
48 |
ataaaaatggagaaggggatgtgaagatgaaaacacagcataaaaatggagagcaacgtgtttgataaggtcaactaagcataagaaaaagcattcgtgt |
147 |
Q |
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| T |
38879551 |
ataaaaatggagaaggggatatgaagatgaaaacacagcataaaaatggagagaaatatgtttgataaggtcaactaagcataagaaatagcattcgtgt |
38879650 |
T |
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| Q |
148 |
gattagcacgaaaaagttatcgtgctatttagcatttttct |
188 |
Q |
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| T |
38879651 |
gattagcacgaaaaagttatcgtgctatttagcatttttct |
38879691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 48 - 187
Target Start/End: Complemental strand, 25910630 - 25910491
Alignment:
| Q |
48 |
ataaaaatggagaaggggatgtgaagatgaaaacacagcataaaaatggagagcaacgtgtttgataaggtcaactaagcataagaaaaagcattcgtgt |
147 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
25910630 |
ataaaaatggagaaggggatgtgaagatgaaaacacagcataaaaatggagagaaacgtgtttgataaggtcaactaagcataagaaatagcattcgcgt |
25910531 |
T |
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| Q |
148 |
gattagcacgaaaaagttatcgtgctatttagcatttttc |
187 |
Q |
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| T |
25910530 |
gattagcacgaaaatgttatcctgctatttagcatttttc |
25910491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 8e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 191 - 350
Target Start/End: Complemental strand, 1251992 - 1251833
Alignment:
| Q |
191 |
tatatacgttgcaagttctctatatgcatgatgtgaaataaataaaacaatgtatttgtgcctttcgtgtattcggtcttgttaagtgtgtgggggtgac |
290 |
Q |
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| T |
1251992 |
tatatacgttgcaagttctctatatgcatgatgtgaaataaataaaacaatgtatctgtggctttcgtgtattcggtcttgttaagtgtgtgggtgtgac |
1251893 |
T |
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| Q |
291 |
tttgnnnnnnnnagagaataagagttaaggatttgatagtactttgtattccttgtaata |
350 |
Q |
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||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1251892 |
ttttttttttttagagaataagagttaaggatttgatagcactttgtattccttgtaata |
1251833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 191 - 350
Target Start/End: Complemental strand, 1241279 - 1241120
Alignment:
| Q |
191 |
tatatacgttgcaagttctctatatgcatgatgtgaaataaataaaacaatgtatttgtgcctttcgtgtattcggtcttgttaagtgtgtgggggtgac |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| || |||||||||||| |||| |||||||| ||||| |
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| T |
1241279 |
tatatacgttgcaagttctctatatgcatgatgtgaaataaataaaacaatggatccgaacctatcatgtattcggtctagttaggtgtgtggatgtgac |
1241180 |
T |
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| Q |
291 |
tttgnnnnnnnnagagaataagagttaaggatttgatagtactttgtattccttgtaata |
350 |
Q |
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| T |
1241179 |
tttgttttttttagagaataagagttaaggatttgatagcactttgtactccttgtaata |
1241120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9966395 - 9966432
Alignment:
| Q |
1 |
cccaaactccaccgttcatctttcttataccatgcatg |
38 |
Q |
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| T |
9966395 |
cccaaactccaccgttcatctttcttataccatgcatg |
9966432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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