View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_55 (Length: 450)
Name: NF1271_low_55
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_55 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 30 - 377
Target Start/End: Complemental strand, 34113081 - 34112734
Alignment:
| Q |
30 |
atacccaccacatatcaagggctgtagagaactcacttaatcatgtgttcaaagtaaggacaaaaacaatacaataaaagcttattcgaggattaagtcc |
129 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34113081 |
atacccaccacatatcaagggcggtagagaactcacttaatcatgtgttcaaagtaaggacaaaaacaatacaataaaagcttattcgaggattaagtcc |
34112982 |
T |
|
| Q |
130 |
aaaacgaacacctgatggccaagagatgcgaaatataatataggccaagacaacaaaaaagtagacaaaagaggattagccgtttatccataaaatagag |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34112981 |
aaaacgaacacctgatggccaagagatgcgaaatataatataggccaagacaacaaaaaagtagacaaaagaggattagccgtttatccataaaatagag |
34112882 |
T |
|
| Q |
230 |
tgagttgaaagtgcaaataaaagttgagggtatgcaatnnnnnnnnctaaggggattcatagtgcnnnnnnnnttgattattggtgtattttttaaaagt |
329 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
34112881 |
tgagttgaaagtgcagataaaagttgagggtatgcaataaaaaaaactaaggggattcatagtgcaaaaaaaatggattattggtgtattttttaaaagt |
34112782 |
T |
|
| Q |
330 |
tgagaggatgcaagtgcatcccctaacttgtatgtggctccgccactg |
377 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
34112781 |
tgagaggatgcatgtgcatcccctaacttgtatgtggctccgccactg |
34112734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 30 - 380
Target Start/End: Complemental strand, 12470662 - 12470311
Alignment:
| Q |
30 |
atacccaccacatatcaagggctgtagagaactcacttaatcatgtgttcaaagtaaggacaaaaacaatacaataaaagcttattcgaggattaagtcc |
129 |
Q |
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||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12470662 |
atacccaccacatatcaagggttgtagagaactctctcaatcatgtgttcaaagtaaggacaaaaacaatacaataaaagcttattcgaggattaagtcc |
12470563 |
T |
|
| Q |
130 |
aaaacgaacacctgatggccaagagatgcgaaatataatataggccaagacaacaaaaaagtagacaaaagaggattagccgtttatccataaaatagag |
229 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |
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|
| T |
12470562 |
aaaacgaacacatgttggccaagagaggcgaaatataatataggccaagacaagaaaaaagtagacaatagaggattaaccgtttatccataaaatagag |
12470463 |
T |
|
| Q |
230 |
tgagttgaaagtgcaaataaaagttgagggtatgcaatnnnnnnnnctaaggggattcatagtgcnnnnnnnntt-gattattggtgtattttttaaaag |
328 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||| || |||||||||||||||||| ||||| |
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| T |
12470462 |
tgagttgaaagtgcaaataaaggttgagggtatgcaataaaaaaaactaagggggttcatagtgcaaaaaaaattggattattggtgtatttttcaaaag |
12470363 |
T |
|
| Q |
329 |
ttgagaggatgcaagtgcatcccctaacttgtatgtggctccgccactgcat |
380 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| |||||||||||||||||| |
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|
| T |
12470362 |
ttgagaggatgcatgtgcatcccctgacttgtacgtggctccgccactgcat |
12470311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 378
Target Start/End: Original strand, 8371133 - 8371175
Alignment:
| Q |
336 |
gatgcaagtgcatcccctaacttgtatgtggctccgccactgc |
378 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| |||||||||| |
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|
| T |
8371133 |
gatgcaagtgcatcccctcacttatatgtggcaccgccactgc |
8371175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 378
Target Start/End: Original strand, 34845340 - 34845381
Alignment:
| Q |
337 |
atgcaagtgcatcccctaacttgtatgtggctccgccactgc |
378 |
Q |
| |
|
||||||||||||||||| |||| |||||||| |||||||||| |
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| T |
34845340 |
atgcaagtgcatcccctcacttatatgtggcaccgccactgc |
34845381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 375
Target Start/End: Original strand, 514006 - 514046
Alignment:
| Q |
335 |
ggatgcaagtgcatcccctaacttgtatgtggctccgccac |
375 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| ||||||| |
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|
| T |
514006 |
ggatgcaagtgcatcccctcacttatatgtggcaccgccac |
514046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 30 - 377
Target Start/End: Original strand, 34306271 - 34306618
Alignment:
| Q |
30 |
atacccaccacatatcaagggctgtagagaactcacttaatcatgtgttcaaagtaaggacaaaaacaatacaataaaagcttattcgaggattaagtcc |
129 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
34306271 |
atacccaccacatatcaagggttgcagagaactcactcaatcatgtgttcaaagtaaggataaaaacaatgcaataaaagcttattcgaggattaagtcc |
34306370 |
T |
|
| Q |
130 |
aaaacgaacacctgatggccaagagatgcgaaatataatataggccaagacaacaaaaaagtagacaaaagaggattagccgtttatccataaaatagag |
229 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34306371 |
aaaacgaacacctgatgggcaagcgaggcgaaatataatataggccaagacaacaaaaaagtagacaaaagaggattagccgtttatccataaaatagag |
34306470 |
T |
|
| Q |
230 |
tgagttgaaagtgcaaataaaagttgagggtatgcaatnnnnnnnnctaaggggattcatagtgcnnnnnnnnttgattattggtgtattttttaaaagt |
329 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||| |||||||| |||||||||| | |||||||||||||||||| |||||| |
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| T |
34306471 |
tgagttgaaagtgtaaataaaggttgagggtatgcaataaaaaaaactaagggggttcatagtgcaaaaaaattggattattggtgtatttttcaaaagt |
34306570 |
T |
|
| Q |
330 |
tgagaggatgcaagtgcatcccctaacttgtatgtggctccgccactg |
377 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| ||||||||||||||| |
|
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| T |
34306571 |
tgagaggatgcatgtgcatcccctgacttgtacgtggctccgccactg |
34306618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 377
Target Start/End: Complemental strand, 8366258 - 8366225
Alignment:
| Q |
344 |
tgcatcccctaacttgtatgtggctccgccactg |
377 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
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|
| T |
8366258 |
tgcatcccctcacttgtatgtggctccgccactg |
8366225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 213; Significance: 1e-116; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 30 - 377
Target Start/End: Complemental strand, 33830165 - 33829828
Alignment:
| Q |
30 |
atacccaccacatatcaagggctgtagagaactcacttaatcatgtgttcaaagtaaggacaaaaacaatacaataaaagcttattcgaggattaagtcc |
129 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33830165 |
atacccaccacatattaagggttgtagagaactcactcaatcatgtgttcaaagtaaggacaaaaacaatacaataaaagcttattcgaggattaagtac |
33830066 |
T |
|
| Q |
130 |
aaaacgaacacctgatggccaagagatgcgaaatataatataggccaagacaacaaaaaagtagacaaaagaggattagccgtttatccataaaatagag |
229 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33830065 |
aaaacgaacacctgatgggcaagagaggcgaaatataatataggccaagacaacaaaaaagtagacaaaagaggattagccgtttatccataaaatagag |
33829966 |
T |
|
| Q |
230 |
tgagttgaaagtgcaaataaaagttgagggtatgcaatnnnnnnnnctaaggggattcatagtgcnnnnnnnnttgattattggtgtattttttaaaagt |
329 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||| || ||||||| | |||||||||||||||||| |||||| |
|
|
| T |
33829965 |
tgagttgaaagtacaaataaaggttgagggtatgcaataaaaaaaact----------atagtgcaaaaaaaatggattattggtgtatttttcaaaagt |
33829876 |
T |
|
| Q |
330 |
tgagaggatgcaagtgcatcccctaacttgtatgtggctccgccactg |
377 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
33829875 |
tgagaggatgcatgtgcatcccctgacttgtacgtggctccgccactg |
33829828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 377
Target Start/End: Complemental strand, 37503541 - 37503383
Alignment:
| Q |
215 |
atccataaaatagagtgagttgaaagtgcaaataaaagttgagggtatgcaatnnnnnnnnctaaggggattcatagtgcnnnnnnnnttgattattggt |
314 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||| | ||||| ||||||||| | |||||||||| |
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|
| T |
37503541 |
atccataaaaatgagtgagttgaaagtgcaaa-aaaagttgagggtatgcaatcaaaaaaacacagggggttcatagtg--aaaaaaatggattattggt |
37503445 |
T |
|
| Q |
315 |
gtattttttaaaagttgagaggatgcaagtgcatcccctaacttgtatgtggctccgccactg |
377 |
Q |
| |
|
| |||||| ||||||||| | ||||| ||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
37503444 |
gcatttttctaaagttgag-gtatgcatgtgcatcccctgacttgtaggtggctccgccactg |
37503383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 37504186 - 37504111
Alignment:
| Q |
34 |
ccaccacatatcaagggctgtagagaactcacttaatcatgtgttcaaagtaaggacaaaaacaatacaataaaag |
109 |
Q |
| |
|
||||| |||||||| || || | |||||||||| ||||||||||| |||| ||| ||||||||||||||| ||||| |
|
|
| T |
37504186 |
ccacctcatatcaatggttggatagaactcactcaatcatgtgttgaaaggaagaacaaaaacaatacaaaaaaag |
37504111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 378
Target Start/End: Original strand, 3626926 - 3626984
Alignment:
| Q |
320 |
ttttaaaagttgagaggatgcaagtgcatcccctaacttgtatgtggctccgccactgc |
378 |
Q |
| |
|
||||||||| | || ||||||||||||||||||| |||| |||||||| || ||||||| |
|
|
| T |
3626926 |
ttttaaaagctcaggggatgcaagtgcatcccctcacttatatgtggcaccaccactgc |
3626984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 377
Target Start/End: Original strand, 24857354 - 24857396
Alignment:
| Q |
335 |
ggatgcaagtgcatcccctaacttgtatgtggctccgccactg |
377 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||| |
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|
| T |
24857354 |
ggatgcatctgcatcccctcacttgtatgtggctccgccactg |
24857396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 378 - 450
Target Start/End: Original strand, 14428325 - 14428397
Alignment:
| Q |
378 |
catcaccaactcacaagtcaccatttatacaagccgcaagcacggttgttgttgccttagatgctactttgtc |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14428325 |
catcaccaactcacaagtcaccatttatacaagccgcaagcacggttgttgttgccttagatgctactttgtc |
14428397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 377
Target Start/End: Complemental strand, 21466471 - 21466414
Alignment:
| Q |
320 |
ttttaaaagttgagaggatgcaagtgcatcccctaacttgtatgtggctccgccactg |
377 |
Q |
| |
|
||||||||| | || ||||||||||||||||||| |||| |||||||| ||||||||| |
|
|
| T |
21466471 |
ttttaaaagatcaggggatgcaagtgcatcccctcacttatatgtggcaccgccactg |
21466414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 377
Target Start/End: Complemental strand, 33224188 - 33224131
Alignment:
| Q |
320 |
ttttaaaagttgagaggatgcaagtgcatcccctaacttgtatgtggctccgccactg |
377 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| |||| |||||||| || |||||| |
|
|
| T |
33224188 |
ttttaaaagtccaggggatgcaagtgcatcccctcacttatatgtggcaccaccactg |
33224131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 25267879 - 25267843
Alignment:
| Q |
344 |
tgcatcccctaacttgtatgtggctccgccactgcat |
380 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25267879 |
tgcatcccctcacttgtatgtggctccgccactgcat |
25267843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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