View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_56 (Length: 450)

Name: NF1271_low_56
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_56
NF1271_low_56
[»] chr1 (7 HSPs)
chr1 (7-443)||(2303577-2304012)
chr1 (7-301)||(34991195-34991479)
chr1 (7-268)||(34984520-34984771)
chr1 (299-443)||(34984892-34985033)
chr1 (7-160)||(34977316-34977467)
chr1 (299-443)||(34977637-34977777)
chr1 (299-386)||(34991583-34991671)
[»] chr5 (2 HSPs)
chr5 (7-266)||(40581873-40582128)
chr5 (299-443)||(40582217-40582361)
[»] chr3 (2 HSPs)
chr3 (54-186)||(22619229-22619360)
chr3 (54-87)||(22123897-22123930)


Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 7 - 443
Target Start/End: Complemental strand, 2304012 - 2303577
Alignment:
Q  7 ggaggttgtcaaaatctaaaagaactatatacattggacacttgtccaacttgaattcaattgttatcgataaaggagcatcgcattctctaaaaaagtt 106  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2304012 ggaggttttcaaaatctaaaagaactatatacattggacacttgtccaacttgaattcaattgttatcgataaaggagcattgcattctctaaaaaagtt 2303913  T
Q  107 cgagttattcaaaatccccaacctcaagaatgttccttctggaatccaacactttagagaagcttgaatttctcaatgttcggaaagctccccttgcaga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2303912 cgagttattcaaaatccccaacctcaagaatgttccttctggaatccaacactttagagaagcttgaatttctcaatgttcggaaagttccccttgcaga 2303813  T
Q  207 atttaatcttagtcaggcaaatcgatccaaaactttaaggactaagggagatagaaatcacatgccgtccaacttacaaaacaggtgaacattttatttt 306  Q
    ||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2303812 atttaatcttagtcatgcaaatcgatccaaaactttaaggact-acggagatagaaatcacatgccgtccaacttacaaaacaggtgaacattttatttt 2303714  T
Q  307 gcctcactttacatttcctctggcatatgctttgaattttttgttattctagatcaataattataaggtttttactgtgtgtttgtgtccaaaagaggtt 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2303713 gcctcactttacatttcctctggcatatgctttgaattttttgttattctagatcaataattataaggtttttactgtgtgtttgtgtccaaaagaggtt 2303614  T
Q  407 tttggttggaatcatttcattctgagtagtataatct 443  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  2303613 tttggttggaatcatttcattctgagcagtctaatct 2303577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 7 - 301
Target Start/End: Original strand, 34991195 - 34991479
Alignment:
Q  7 ggaggttgtcaaaatctaaaagaactatatacattggacacttgtccaacttgaattcaattgttatcgataaaggagcatcgcattctctaaaaaagtt 106  Q
    |||||||||||||||||||| ||||||||  ||||||| |||   ||||| |||||||||||||||| |||||||||||||  |||||||||||||||||    
T  34991195 ggaggttgtcaaaatctaaaggaactata--cattggagactgtcccaacatgaattcaattgttattgataaaggagcattacattctctaaaaaagtt 34991292  T
Q  107 cgagttattcaaaatccccaacctcaagaatgttccttctggaatccaacactttagagaagcttgaatttctcaatgttcggaaagctccccttgcaga 206  Q
     ||||||||| | ||||||||||||||||      ||||||||||||||||||| ||||||||||||| ||||||||||| || | | ||||||||||||    
T  34991293 tgagttattcgagatccccaacctcaaga------cttctggaatccaacactt-agagaagcttgaagttctcaatgtttgggatgttccccttgcaga 34991385  T
Q  207 atttaatcttagtcaggcaaatcgatccaaaactttaaggactaagggagatagaaatcacatgccgtccaacttacaaaacaggtgaacatttt 301  Q
    ||||||||||||| ||| ||||| |||| |||||||||||||||| ||||||||||||||||  || ||||| |   | ||||||||||||||||    
T  34991386 atttaatcttagtgaggaaaatcaatccgaaactttaaggactaa-ggagatagaaatcacaaaccatccaaatcggagaacaggtgaacatttt 34991479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 7 - 268
Target Start/End: Original strand, 34984520 - 34984771
Alignment:
Q  7 ggaggttgtcaaaatctaaaagaactatatacattggacacttgtccaacttgaattcaattgttatcgataaaggagcatcgcattctctaaaaaagtt 106  Q
    |||||||||||||||||||| ||||| ||  ||||||| |||||  |||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34984520 ggaggttgtcaaaatctaaaggaactgta--cattggagacttgcgcaacatgaattcaattgttatcgataaaggagcattgcattctctaaaaaagtt 34984617  T
Q  107 cgagttattcaaaatccccaacctcaagaatgttccttctggaatccaacactttagagaagcttgaatttctcaatgttcggaaagctccccttgcaga 206  Q
     |||||||||  ||| |||||||||      ||||||||||| ||||||||| ||||||||||||||| |||||||| || ||   | ||||||||||||    
T  34984618 tgagttattcggaatgcccaacctc------gttccttctgggatccaacac-ttagagaagcttgaagttctcaatttttgggctgttccccttgcaga 34984710  T
Q  207 atttaatcttagtcaggcaaatcgatccaaaactttaaggactaagggagatagaaatcaca 268  Q
    |||||||||||||||| |||||| || |||||||||||||| |||  |||||||||||||||    
T  34984711 atttaatcttagtcagccaaatcaattcaaaactttaaggattaa-tgagatagaaatcaca 34984771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 299 - 443
Target Start/End: Original strand, 34984892 - 34985033
Alignment:
Q  299 tttattttgcctcactttacatttcctctggcatatgctttgaattttttgttattctagatcaataattataaggtttttactgtgtgtttgtgtccaa 398  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| |||||||||||||||||||||| ||||   ||||| ||      
T  34984892 tttattttgcctcactttacatttcttctggcatatgctttgtattttttgctattctacatcaataattataaggtttttattgtg---ttgtgccctc 34984988  T
Q  399 aagaggtttttggttggaatcatttcattctgagtagtataatct 443  Q
    ||||||||||||||||||||| || ||||||||| ||| ||||||    
T  34984989 aagaggtttttggttggaatccttacattctgagcagtctaatct 34985033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 34977316 - 34977467
Alignment:
Q  7 ggaggttgtcaaaatctaaaagaactatatacattggacacttgtccaacttgaattcaattgttatcgataaaggagcatcgcattctctaaaaaagtt 106  Q
    ||||||||||||||||| || ||||| ||  ||||||| | |   ||||| |||||||||||||||||||||||||||||| |||||||||||||||| |    
T  34977316 ggaggttgtcaaaatcttaaggaactgta--cattggagaatgtcccaacatgaattcaattgttatcgataaaggagcattgcattctctaaaaaagct 34977413  T
Q  107 cgagttattcaaaatccccaacctcaagaatgttccttctggaatccaacactt 160  Q
     ||||||||| |||||||||||||| |||  ||||||||||| |||||||||||    
T  34977414 tgagttattcgaaatccccaacctcgagacggttccttctgggatccaacactt 34977467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 299 - 443
Target Start/End: Original strand, 34977637 - 34977777
Alignment:
Q  299 tttattttgcctcactttacatttcctctggcatatgctttgaattttttgttattctagatcaataattataaggtttttactgtgtgtttgtgtccaa 398  Q
    ||||||||||||||||||||||||| |||||||||||||||   ||||||||||||||| ||||||||||||||| |  ||| ||||   ||||| ||      
T  34977637 tttattttgcctcactttacatttcttctggcatatgcttt-ttttttttgttattctacatcaataattataagatacttattgtg---ttgtgccctc 34977732  T
Q  399 aagaggtttttggttggaatcatttcattctgagtagtataatct 443  Q
    ||||||||||||||||||||| |||||||||||| ||| ||||||    
T  34977733 aagaggtttttggttggaatcctttcattctgagcagtctaatct 34977777  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 386
Target Start/End: Original strand, 34991583 - 34991671
Alignment:
Q  299 tttattttgcctcactttacatttcctctggcatatgctttg-aattttttgttattctagatcaataattataaggtttttactgtgt 386  Q
    |||||||||||||||||||  |||| |||||||||| ||||| | |||||| |||||||| || ||||||||||||||||||| |||||    
T  34991583 tttattttgcctcactttatttttcttctggcatattctttgtattttttttttattctacattaataattataaggtttttattgtgt 34991671  T

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Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 7 - 266
Target Start/End: Original strand, 40581873 - 40582128
Alignment:
Q  7 ggaggttgtcaaaatctaaaagaactatatacattggacacttgtccaacttgaattcaattgttatcgataaaggagcatcgcattctctaaaaaagtt 106  Q
    |||||||||||||||||||| ||||| ||  |||||||  ||||  |||| |||||||||||||||||||||||||||||| |||||||||||||  |||    
T  40581873 ggaggttgtcaaaatctaaaggaactgta--cattggaggcttgctcaacgtgaattcaattgttatcgataaaggagcattgcattctctaaaattgtt 40581970  T
Q  107 cgagttattcaaaatccccaacctcaagaatgttccttctggaatccaacactttagagaagcttgaatttctcaatgttcggaaagctccccttgcaga 206  Q
     ||||||||| | ||||||||||||||||  ||||||||||| |||||||||  |||||||||||||| ||||  |||||| | | |  | ||||||| |    
T  40581971 tgagttattccatatccccaacctcaagacggttccttctgggatccaacac-ctagagaagcttgaagttctacatgttccgtatgaactccttgcata 40582069  T
Q  207 atttaatcttagtcaggcaaatcgatccaaaactttaaggactaagggagatagaaatca 266  Q
    |||||||||||||  |||||||| |||||||||||||| |||||| ||||||||||||||    
T  40582070 atttaatcttagtgtggcaaatcaatccaaaactttaatgactaa-ggagatagaaatca 40582128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 299 - 443
Target Start/End: Original strand, 40582217 - 40582361
Alignment:
Q  299 tttattttgcctcactttacatttcctctggcatatgctttgaa---ttttttgttattctagatcaataattataaggtttttactgtgtgtttgtgtc 395  Q
    ||||||||||||||||||||||||| |||| || |||||||| |   |||||||||||||||  |||||||||||||||||| || ||||   ||||  |    
T  40582217 tttattttgcctcactttacatttcttctgccacatgctttgtatttttttttgttattctacgtcaataattataaggtttctattgtg---ttgtacc 40582313  T
Q  396 caaaagaggtttttggttggaatcatttcattctgagtagtataatct 443  Q
    |  ||||||||||||||||||||||||||||||| || ||| ||||||    
T  40582314 ctcaagaggtttttggttggaatcatttcattctaagcagtctaatct 40582361  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 186
Target Start/End: Complemental strand, 22619360 - 22619229
Alignment:
Q  54 aacttgaattcaattgttatcgataaaggagcatcgcattctctaaaaaagttcgagttattcaaaatccccaacctcaagaatgttccttctggaatcc 153  Q
    |||||| |||||||| | ||||| ||||||||    |||||||||||||||||||||||||  |  ||||||||||||||||  |||||   ||| ||||    
T  22619360 aacttgcattcaattttcatcgacaaaggagcgctacattctctaaaaaagttcgagttatctagcatccccaacctcaagacggttccagatggcatcc 22619261  T
Q  154 aacactttagagaagcttgaatttctcaatgtt 186  Q
     |||| ||||| ||||||||| ||||| |||||    
T  22619260 gacac-ttagaaaagcttgaagttctcgatgtt 22619229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 22123897 - 22123930
Alignment:
Q  54 aacttgaattcaattgttatcgataaaggagcat 87  Q
    ||||||||||||||||||||||| ||||||||||    
T  22123897 aacttgaattcaattgttatcgaaaaaggagcat 22123930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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