View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_57 (Length: 448)

Name: NF1271_low_57
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_57
NF1271_low_57
[»] chr7 (2 HSPs)
chr7 (63-402)||(30909586-30909929)
chr7 (70-125)||(30903128-30903183)
[»] chr6 (4 HSPs)
chr6 (304-402)||(11298102-11298200)
chr6 (65-132)||(11292628-11292695)
chr6 (306-386)||(11292757-11292837)
chr6 (70-117)||(11297986-11298033)
[»] chr3 (3 HSPs)
chr3 (65-122)||(36662093-36662150)
chr3 (78-123)||(36706262-36706307)
chr3 (80-122)||(36713907-36713949)


Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 63 - 402
Target Start/End: Original strand, 30909586 - 30909929
Alignment:
Q  63 gcatctccaagaatatggtagagacacaaggttacacatgtgaagaacataaggtaaataaatcatagcagatatgttgcagcatattctcacatgccat 162  Q
    |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30909586 gcatctgcaaaagtatggtagagacacaaggttacacatgtgaagaacataaggtaaataaatcatagcagacatgttgcagcatattctcacatgccat 30909685  T
Q  163 ttgattatgaagaaatattttccatatttgatgtactaa----ctataattatactaaaatcttaaatatgagacaagttaatgtgatgaaccaagcaag 258  Q
    |||||||||||||||||||||||||||||||||||||||    |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  30909686 ttgattatgaagaaatattttccatatttgatgtactaattaactataattatgctaaaatcttaaatatgagacaagttaatgtgatgaaccaaacaag 30909785  T
Q  259 tacacatattttttgttgttgacaaaagcgcgcacatatattcagagatttagttaacacgaatattatttttgctgactcagattacaacatcggatgg 358  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||    
T  30909786 tacacatattttttgttgtggacaaaagcgcgcacatatattcagagatttagttaacacgaatattatttttactgactcaggttacaacatcagatgg 30909885  T
Q  359 cttcatcttgagtattcagagattgccgacaaggcggtccggtg 402  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  30909886 cttcatcttgagtattcaaagattgccgacaaggcggtccggtg 30909929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 30903128 - 30903183
Alignment:
Q  70 caagaatatggtagagacacaaggttacacatgtgaagaacataaggtaaataaat 125  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30903128 caagagtatggtagagacacaagggtacacatgtgaagaacataaggtaaataaat 30903183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 304 - 402
Target Start/End: Original strand, 11298102 - 11298200
Alignment:
Q  304 agatttagttaacacgaatattatttttgctgactcagattacaacatcggatggcttcatcttgagtattcagagattgccgacaaggcggtccggtg 402  Q
    ||||||||||||||| ||||||||||||||| ||||||  |||||||||||||||||||||| |||| || |||||||||||| || ||||||||||||    
T  11298102 agatttagttaacactaatattatttttgctaactcaggctacaacatcggatggcttcatcctgagcatccagagattgccggcagggcggtccggtg 11298200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 11292628 - 11292695
Alignment:
Q  65 atctccaagaatatggtagagacacaaggttacacatgtgaagaacataaggtaaataaatcatagca 132  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  11292628 atctgcaagagtatggtagagacacaaggttacacttgtgaagaacataaggtaattaaatcatagca 11292695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 306 - 386
Target Start/End: Original strand, 11292757 - 11292837
Alignment:
Q  306 atttagttaacacgaatattatttttgctgactcagattacaacatcggatggcttcatcttgagtattcagagattgccg 386  Q
    ||||||||||||  ||||||||||||||| ||||||  |||||||||||||||||||||| |||| || ||||||||||||    
T  11292757 atttagttaacaataatattatttttgctaactcaggctacaacatcggatggcttcatcctgagcatccagagattgccg 11292837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 11297986 - 11298033
Alignment:
Q  70 caagaatatggtagagacacaaggttacacatgtgaagaacataaggt 117  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||    
T  11297986 caagagtatgatagagacacaaggttacacatgtgaagaacataaggt 11298033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 36662093 - 36662150
Alignment:
Q  65 atctccaagaatatggtagagacacaaggttacacatgtgaagaacataaggtaaata 122  Q
    |||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  36662093 atctgcaagactatggtagaaacacaaggttacacatgtgaagaacataaggtaaata 36662150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 36706307 - 36706262
Alignment:
Q  78 tggtagagacacaaggttacacatgtgaagaacataaggtaaataa 123  Q
    |||| ||| ||||||||||| |||||||||||||||||||||||||    
T  36706307 tggttgagccacaaggttacccatgtgaagaacataaggtaaataa 36706262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 36713949 - 36713907
Alignment:
Q  80 gtagagacacaaggttacacatgtgaagaacataaggtaaata 122  Q
    ||||||||||||||||| || ||||||||||||| ||||||||    
T  36713949 gtagagacacaaggttatacgtgtgaagaacatacggtaaata 36713907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University