View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_58 (Length: 443)

Name: NF1271_low_58
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_58
NF1271_low_58
[»] chr3 (37 HSPs)
chr3 (8-226)||(8849518-8849738)
chr3 (222-361)||(8873645-8873783)
chr3 (269-361)||(37076127-37076219)
chr3 (294-361)||(27200144-27200211)
chr3 (294-389)||(50900558-50900653)
chr3 (260-361)||(49408234-49408335)
chr3 (266-357)||(52375787-52375879)
chr3 (267-361)||(36701105-36701200)
chr3 (274-357)||(27199708-27199792)
chr3 (266-357)||(33412610-33412702)
chr3 (266-349)||(49407794-49407877)
chr3 (294-349)||(52237282-52237337)
chr3 (280-357)||(43222402-43222480)
chr3 (294-343)||(40275119-40275168)
chr3 (294-357)||(14654645-14654709)
chr3 (294-357)||(37075712-37075776)
chr3 (295-357)||(8874142-8874205)
chr3 (294-349)||(16689384-16689439)
chr3 (294-349)||(49720397-49720452)
chr3 (267-349)||(25534889-25534971)
chr3 (294-348)||(34104664-34104718)
chr3 (294-348)||(47431722-47431776)
chr3 (320-361)||(2323431-2323472)
chr3 (294-350)||(329872-329928)
chr3 (294-357)||(330292-330356)
chr3 (281-349)||(2044284-2044352)
chr3 (294-357)||(40275550-40275613)
chr3 (294-357)||(40838678-40838742)
chr3 (294-357)||(40839108-40839172)
chr3 (294-357)||(43678740-43678804)
chr3 (294-350)||(49951572-49951628)
chr3 (268-348)||(49952012-49952092)
chr3 (266-357)||(50900983-50901075)
chr3 (294-350)||(51473320-51473376)
chr3 (294-357)||(51827983-51828047)
chr3 (294-357)||(52236842-52236906)
chr3 (302-350)||(55389639-55389687)
[»] chr5 (19 HSPs)
chr5 (274-361)||(16753023-16753110)
chr5 (280-361)||(32305830-32305912)
chr5 (267-361)||(41834512-41834606)
chr5 (310-361)||(28494886-28494937)
chr5 (281-357)||(4966829-4966906)
chr5 (269-361)||(10721787-10721879)
chr5 (294-350)||(15115556-15115612)
chr5 (274-361)||(22651351-22651439)
chr5 (260-357)||(32697682-32697780)
chr5 (294-357)||(22651767-22651831)
chr5 (306-357)||(27307516-27307568)
chr5 (281-349)||(38900657-38900725)
chr5 (294-361)||(13557018-13557085)
chr5 (294-348)||(14340424-14340478)
chr5 (281-358)||(17260675-17260753)
chr5 (281-361)||(20266367-20266448)
chr5 (294-357)||(4967227-4967291)
chr5 (274-357)||(14340866-14340950)
chr5 (294-350)||(15029773-15029829)
[»] chr4 (28 HSPs)
chr4 (267-361)||(17503973-17504067)
chr4 (294-361)||(35193755-35193822)
chr4 (294-361)||(40160543-40160610)
chr4 (268-349)||(30597984-30598065)
chr4 (267-357)||(55677414-55677505)
chr4 (281-361)||(229174-229255)
chr4 (305-361)||(24336215-24336272)
chr4 (294-350)||(17504423-17504479)
chr4 (265-349)||(34807113-34807197)
chr4 (294-357)||(35193334-35193398)
chr4 (294-357)||(46737111-46737175)
chr4 (294-357)||(54440597-54440661)
chr4 (269-324)||(44892637-44892692)
chr4 (292-357)||(45838571-45838637)
chr4 (281-361)||(229611-229692)
chr4 (294-347)||(24335787-24335840)
chr4 (294-343)||(34789854-34789903)
chr4 (305-357)||(40160131-40160184)
chr4 (305-361)||(51309957-51310014)
chr4 (294-350)||(21034261-21034317)
chr4 (294-361)||(23986546-23986614)
chr4 (294-350)||(24851342-24851398)
chr4 (294-357)||(24851922-24851986)
chr4 (294-350)||(28465545-28465601)
chr4 (294-350)||(33689855-33689911)
chr4 (294-350)||(34789408-34789464)
chr4 (274-350)||(34807603-34807679)
chr4 (294-350)||(54441033-54441089)
[»] chr1 (25 HSPs)
chr1 (283-361)||(17088161-17088239)
chr1 (290-361)||(48174174-48174246)
chr1 (268-361)||(39485491-39485584)
chr1 (266-360)||(50926694-50926789)
chr1 (294-361)||(44291327-44291395)
chr1 (294-357)||(45048181-45048245)
chr1 (294-360)||(23526983-23527050)
chr1 (281-357)||(17641825-17641902)
chr1 (294-343)||(23526684-23526733)
chr1 (281-357)||(50304452-50304529)
chr1 (294-357)||(8229663-8229727)
chr1 (274-357)||(8230097-8230181)
chr1 (281-356)||(25274769-25274845)
chr1 (294-350)||(37505093-37505149)
chr1 (281-361)||(45048588-45048668)
chr1 (294-349)||(2868173-2868228)
chr1 (294-349)||(29438956-29439011)
chr1 (294-357)||(30786797-30786862)
chr1 (294-357)||(10278574-10278638)
chr1 (294-357)||(16298708-16298772)
chr1 (294-357)||(17088595-17088659)
chr1 (294-350)||(29439386-29439442)
chr1 (294-350)||(34555846-34555902)
chr1 (281-349)||(50419725-50419793)
chr1 (294-357)||(52335966-52336030)
[»] chr2 (19 HSPs)
chr2 (266-357)||(11540094-11540186)
chr2 (267-349)||(42192708-42192790)
chr2 (281-361)||(28143481-28143562)
chr2 (294-357)||(42192266-42192330)
chr2 (274-357)||(63420-63504)
chr2 (281-360)||(20495206-20495286)
chr2 (294-357)||(31797233-31797297)
chr2 (294-357)||(38007976-38008040)
chr2 (294-357)||(43160035-43160099)
chr2 (295-357)||(43216165-43216228)
chr2 (308-360)||(5035903-5035956)
chr2 (294-350)||(62983-63039)
chr2 (294-357)||(4808905-4808969)
chr2 (294-357)||(6949900-6949964)
chr2 (263-343)||(14942317-14942397)
chr2 (302-357)||(15550707-15550763)
chr2 (258-357)||(24140130-24140230)
chr2 (294-350)||(32418610-32418666)
chr2 (294-350)||(38008415-38008471)
[»] scaffold0007 (2 HSPs)
scaffold0007 (294-361)||(205819-205887)
scaffold0007 (294-360)||(210790-210857)
[»] chr7 (26 HSPs)
chr7 (267-357)||(2758154-2758245)
chr7 (294-361)||(9393762-9393829)
chr7 (294-361)||(35579338-35579405)
chr7 (281-357)||(787242-787319)
chr7 (266-350)||(7732486-7732570)
chr7 (294-361)||(34595224-34595292)
chr7 (314-361)||(45815519-45815566)
chr7 (279-349)||(33880631-33880701)
chr7 (281-361)||(35578912-35578992)
chr7 (294-361)||(39136712-39136780)
chr7 (290-349)||(39136998-39137057)
chr7 (267-361)||(49064033-49064128)
chr7 (294-361)||(4477728-4477796)
chr7 (294-357)||(5333906-5333970)
chr7 (294-357)||(5334275-5334339)
chr7 (294-350)||(27245668-27245724)
chr7 (294-349)||(27245229-27245284)
chr7 (294-349)||(48247613-48247668)
chr7 (294-357)||(5746097-5746160)
chr7 (294-350)||(9181558-9181614)
chr7 (294-350)||(15712391-15712447)
chr7 (294-350)||(25637662-25637718)
chr7 (294-350)||(28687619-28687675)
chr7 (294-357)||(35161258-35161322)
chr7 (294-357)||(39388724-39388788)
chr7 (310-361)||(45815383-45815435)
[»] scaffold0108 (2 HSPs)
scaffold0108 (268-361)||(15550-15644)
scaffold0108 (267-343)||(15112-15188)
[»] chr8 (16 HSPs)
chr8 (267-349)||(7910615-7910697)
chr8 (260-349)||(35427277-35427366)
chr8 (294-357)||(7911072-7911136)
chr8 (294-357)||(42035798-42035862)
chr8 (281-361)||(28876916-28876997)
chr8 (266-357)||(6115567-6115659)
chr8 (266-357)||(41260717-41260809)
chr8 (266-349)||(16578106-16578189)
chr8 (294-357)||(15255879-15255943)
chr8 (294-350)||(18049616-18049672)
chr8 (294-350)||(28254451-28254507)
chr8 (294-357)||(28254882-28254946)
chr8 (281-361)||(28877342-28877422)
chr8 (267-343)||(599531-599607)
chr8 (294-357)||(18050047-18050111)
chr8 (294-350)||(18428226-18428282)
[»] chr6 (9 HSPs)
chr6 (294-361)||(32836033-32836100)
chr6 (294-361)||(35163210-35163277)
chr6 (268-357)||(28636292-28636382)
chr6 (294-350)||(5114494-5114550)
chr6 (294-350)||(24640649-24640705)
chr6 (294-357)||(35163643-35163707)
chr6 (268-325)||(22534213-22534270)
chr6 (294-347)||(32836463-32836516)
chr6 (305-360)||(835431-835487)
[»] scaffold0097 (1 HSPs)
scaffold0097 (281-343)||(46279-46341)
[»] scaffold0712 (1 HSPs)
scaffold0712 (294-350)||(6418-6474)
[»] scaffold0709 (1 HSPs)
scaffold0709 (294-350)||(6436-6492)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 8849518 - 8849738
Alignment:
Q  8 gagttgttatgtttgtgtctgtggtgttgtgaggttgataatggaaatggaatatgggccaagtagagaaagcgtatcaaacatttctttgttgnnnnnn 107  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  8849518 gagttgttatgtttgtgtttgtggtgttgtgaggttgataatggaaatggaatatgggccaagtagagaaagcgtatcaaacatttctttgttgttttta 8849617  T
Q  108 nnnnnngaattaaatttctacaagtgggtttctctttctaactcaactcaagttgtttgttgttctactttttcttgccaccttttcttgtccaagagg- 206  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8849618 ttttttgaattaaatttctacaagtgggtttctctttctaactcaactcaagttgtttgttgttctactttttcttgccaccttttcttgtccaagaggt 8849717  T
Q  207 -catgtgtgacgtgtttatgt 226  Q
      |||||||||||||||||||    
T  8849718 atatgtgtgacgtgtttatgt 8849738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 222 - 361
Target Start/End: Original strand, 8873645 - 8873783
Alignment:
Q  222 tatgtctatgatgatatgatttgatatgatgaaaataaaaatagtaggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttct 321  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||  || |||| | |||||||  ||| ||||||||||  | |||||||||||  |    
T  8873645 tatgtctatgatgatatgatttgatatgatgaaaataaaaatagcagatttaattaca-ttttggtcctcgcattttgatcagtttacgaaaatggtcat 8873743  T
Q  322 gcctcttttaaatggaacaaaaccgtcctaaactatcatg 361  Q
    | ||||||||||| ||||||||||||| ||| ||||||||    
T  8873744 gtctcttttaaatcgaacaaaaccgtcataacctatcatg 8873783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 269 - 361
Target Start/End: Complemental strand, 37076219 - 37076127
Alignment:
Q  269 gcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcctaaactatcatg 361  Q
    |||| |||| |||||||||  ||| |||||||||| |||||||||||||| | |||||||| |||| |||||||| |||||||||||||||||    
T  37076219 gcttaattacatttttggtcctcgcattttgatcagctcacgaaaatggtcccgcctctttcaaatcgaacaaaatcgtcctaaactatcatg 37076127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 361
Target Start/End: Complemental strand, 27200211 - 27200144
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcctaaactatcatg 361  Q
    ||||||| || ||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||    
T  27200211 attttgaccagctcacgaaaatggttctgcctctttcaaatcgaacaataccgtcctaaactatcatg 27200144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 389
Target Start/End: Original strand, 50900558 - 50900653
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcctaaactatcatgnnnnnnngcagttttagtcataccttct 389  Q
    |||||||||| |||||||||||||| ||  |||||| |||| ||||||||||||||||||||||||||       |||||||||||| ||||||||    
T  50900558 attttgatcagctcacgaaaatggtcctaactctttcaaatcgaacaaaaccgtcctaaactatcatgttttttcgcagttttagtcctaccttct 50900653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 260 - 361
Target Start/End: Complemental strand, 49408335 - 49408234
Alignment:
Q  260 aaatagtaggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcctaaactatca 359  Q
    ||||| || |||| |||| | |||||||| ||| ||||||| || ||||||||||||||| || |||||| |||| ||||||||| ||||||||||||||    
T  49408335 aaataatacgcttaattacacttttggtactcgcattttgaccatctcacgaaaatggttgtgtctctttcaaatcgaacaaaactgtcctaaactatca 49408236  T
Q  360 tg 361  Q
    ||    
T  49408235 tg 49408234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 357
Target Start/End: Complemental strand, 52375879 - 52375787
Alignment:
Q  266 taggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc-taaactat 357  Q
    ||||||| |||| | |||||||  ||| ||||||| ||||||||||||||||| || |||||||||||| |||||||| ||||| ||||||||    
T  52375879 taggcttaattacacttttggtcctcgcattttgaccaactcacgaaaatggtcctacctcttttaaattgaacaaaatcgtccataaactat 52375787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 361
Target Start/End: Original strand, 36701105 - 36701200
Alignment:
Q  267 aggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc-taaactatcatg 361  Q
    |||||| |||| | |||||||  ||| ||||||||||||||||||||||| |  ||||||||| |||| |||||||| ||||| ||||||||||||    
T  36701105 aggcttaattacacttttggtcctcgcattttgatcaactcacgaaaatgatcatgcctctttcaaatcgaacaaaatcgtccataaactatcatg 36701200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 357
Target Start/End: Original strand, 27199708 - 27199792
Alignment:
Q  274 attatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtc-ctaaactat 357  Q
    |||| |||||||||  ||| ||||||| || ||||||||||||||  ||||||||| |||| ||||||||||||| |||||||||    
T  27199708 attacatttttggtcctcgcattttgaccagctcacgaaaatggtcatgcctctttcaaatcgaacaaaaccgtcactaaactat 27199792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 357
Target Start/End: Complemental strand, 33412702 - 33412610
Alignment:
Q  266 taggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| |||| | |||||||  ||| |||||||||| |||||||||||||||||| ||||||  ||| |||||||| ||| ||||||||||    
T  33412702 taggcttaattacacttttggtcctcgcattttgatcagctcacgaaaatggttctgtctctttcgaatcgaacaaaatcgtccctaaactat 33412610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 349
Target Start/End: Original strand, 49407794 - 49407877
Alignment:
Q  266 taggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc 349  Q
    ||||||| |||| | |||||||  ||| ||||||| || ||||||||||||||  ||||||||| |||| ||||||||||||||    
T  49407794 taggcttaattacacttttggtcctcgcattttgaccagctcacgaaaatggtcatgcctctttcaaatagaacaaaaccgtcc 49407877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 52237337 - 52237282
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc 349  Q
    ||||||| ||||||||||||||||| || |||||||||||| |||||||| |||||    
T  52237337 attttgaccaactcacgaaaatggtcctacctcttttaaatcgaacaaaatcgtcc 52237282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 43222402 - 43222480
Alignment:
Q  280 tttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    |||||||| |||  ||||||| |||||||||||||| ||| || ||||||||||| |||||||| ||| ||||||||||    
T  43222402 tttttggtcatcacattttgaccaactcacgaaaatagttatgtctcttttaaatcgaacaaaatcgtccctaaactat 43222480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 40275119 - 40275168
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaa 343  Q
    ||||||| ||||||||||||||||| || |||||||||||| ||||||||    
T  40275119 attttgaccaactcacgaaaatggtcctacctcttttaaatcgaacaaaa 40275168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 14654709 - 14654645
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc-taaactat 357  Q
    ||||||| |||||||||||| ||| ||| |||||||||||| |||||||| ||||| ||||||||    
T  14654709 attttgaccaactcacgaaattggctctacctcttttaaatcgaacaaaatcgtccgtaaactat 14654645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 37075712 - 37075776
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| ||||||||||||||||| |||||||||| ||||  |||||| |||| ||||||||||    
T  37075712 attttgaccaactcacgaaaatggtcctgcctctttcaaatcaaacaaacccgtccctaaactat 37075776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 357
Target Start/End: Complemental strand, 8874205 - 8874142
Alignment:
Q  295 ttttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    |||||| || |||||||||||||| |||| |||||||||| |||||||||| | ||||||||||    
T  8874205 ttttgaccagctcacgaaaatggtcctgcttcttttaaatcgaacaaaaccttccctaaactat 8874142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 16689384 - 16689439
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc 349  Q
    ||||||| |||||||||||| |||| || |||||||||||| |||||||| |||||    
T  16689384 attttgaccaactcacgaaattggtcctacctcttttaaatcgaacaaaatcgtcc 16689439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 49720397 - 49720452
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc 349  Q
    ||||||| |||||||||||| |||| || |||||||||||| |||||||| |||||    
T  49720397 attttgaccaactcacgaaattggtcctacctcttttaaatcgaacaaaatcgtcc 49720452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 349
Target Start/End: Original strand, 25534889 - 25534971
Alignment:
Q  267 aggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc 349  Q
    |||||| |||| | |||||||  ||| ||||||| ||| ||| ||||||||| || |||||||||||| |||||||| |||||    
T  25534889 aggcttaattacacttttggtcctcgcattttgaccaattcatgaaaatggtcctacctcttttaaatcgaacaaaatcgtcc 25534971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 348
Target Start/End: Original strand, 34104664 - 34104718
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtc 348  Q
    ||||||| ||||||||||||||||||||  || |||||||| |||||||| ||||    
T  34104664 attttgaccaactcacgaaaatggttctatcttttttaaattgaacaaaatcgtc 34104718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 348
Target Start/End: Original strand, 47431722 - 47431776
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtc 348  Q
    ||||||| |||||||||||||||||  | |||||||||||| |||||||| ||||    
T  47431722 attttgaccaactcacgaaaatggtcatacctcttttaaatcgaacaaaatcgtc 47431776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 361
Target Start/End: Original strand, 2323431 - 2323472
Alignment:
Q  320 ctgcctcttttaaatggaacaaaaccgtcctaaactatcatg 361  Q
    |||||||||| |||| |||||||||| |||||||||||||||    
T  2323431 ctgcctctttcaaatcgaacaaaaccatcctaaactatcatg 2323472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 329872 - 329928
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||| ||||||||||||||||| ||  || |||||||| |||||||| ||||||    
T  329872 attttgaccaactcacgaaaatggtcctaacttttttaaatcgaacaaaatcgtcct 329928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 330356 - 330292
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| ||||||||||||||||| || ||| ||||||||  ||||||| ||| ||||||||||    
T  330356 attttgaccaactcacgaaaatggtcctaccttttttaaatcaaacaaaatcgtccctaaactat 330292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 349
Target Start/End: Original strand, 2044284 - 2044352
Alignment:
Q  281 ttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc 349  Q
    |||||||  ||| ||||||| ||||||| |||||||||  | |||||||||||| |||||||| |||||    
T  2044284 ttttggttctcgcattttgaccaactcatgaaaatggtcatacctcttttaaatcgaacaaaatcgtcc 2044352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 40275613 - 40275550
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtc-ctaaactat 357  Q
    ||||||| |||||||||||| |||| || |||||||||||| |||||||| |||| |||||||||    
T  40275613 attttgaccaactcacgaaa-tggtcctacctcttttaaatcgaacaaaatcgtctctaaactat 40275550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 40838678 - 40838742
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc-taaactat 357  Q
    ||||||| |||||||||||||||||  | ||||||||||||  ||||||| ||||| ||||||||    
T  40838678 attttgaccaactcacgaaaatggtcatacctcttttaaatcaaacaaaatcgtccataaactat 40838742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 40839172 - 40839108
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    |||||||  ||||||||||||||||  | |||||||||||| |||||||| ||| ||||||||||    
T  40839172 attttgacaaactcacgaaaatggtcttacctcttttaaatcgaacaaaatcgtccctaaactat 40839108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 43678804 - 43678740
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc-taaactat 357  Q
    |||||||||||||||||||  |||| |  |||||||||||| |||||||| ||||| ||||||||    
T  43678804 attttgatcaactcacgaacttggtccaacctcttttaaatcgaacaaaatcgtccataaactat 43678740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 49951572 - 49951628
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||| ||||||||||||||||| ||  || |||||||| |||||||| ||||||    
T  49951572 attttgaccaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtcct 49951628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 348
Target Start/End: Complemental strand, 49952092 - 49952012
Alignment:
Q  268 ggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtc 348  Q
    ||||| |||| |||||||||  | | ||||||| |||||||||||| ||||  | |||||||||||| |||||||| ||||    
T  49952092 ggcttaattacatttttggtccttgcattttgaccaactcacgaaattggtcttacctcttttaaatcgaacaaaatcgtc 49952012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 357
Target Start/End: Complemental strand, 50901075 - 50900983
Alignment:
Q  266 taggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| |||| | |||||||  ||| ||||||| || ||||| |||||||  |||||||||  |||| |||||||||||| ||||||||||    
T  50901075 taggcttaattacacttttggtcctcgcattttgaccagctcacaaaaatggccctgcctcttacaaatcgaacaaaaccgtccctaaactat 50900983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 51473376 - 51473320
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||| ||||||||||||||||| ||  || |||||||| |||||||| ||||||    
T  51473376 attttgaccaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtcct 51473320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 51827983 - 51828047
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| |||||||||||| |||| ||  ||||||||||| |||||||| ||| ||||||||||    
T  51827983 attttgaccaactcacgaaattggtcctagctcttttaaatcgaacaaaatcgtccctaaactat 51828047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 52236842 - 52236906
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| ||| |||||||||||||  | |||||||||||| |||||||| ||| ||||||||||    
T  52236842 attttgaacaattcacgaaaatggtcatacctcttttaaatcgaacaaaatcgtccctaaactat 52236906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 350
Target Start/End: Original strand, 55389639 - 55389687
Alignment:
Q  302 caactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||||||||||||| || ||| |||||||| |||||||| ||||||    
T  55389639 caactcacgaaaatggtcctaccttttttaaatcgaacaaaatcgtcct 55389687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 274 - 361
Target Start/End: Complemental strand, 16753110 - 16753023
Alignment:
Q  274 attatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcctaaactatcatg 361  Q
    |||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||| |||| |||| ||||| ||||||| |||||||    
T  16753110 attacatttttggtcatcgcattttgaccaactcacgaaaatggttctgcctctttcaaatcgaacgaaaccatcctaaattatcatg 16753023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 32305830 - 32305912
Alignment:
Q  280 tttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactatcatg 361  Q
    |||||||| |||| |||||||||| ||||||||||| ||||| |||||||||||| |||||||| ||| ||||||||||||||    
T  32305830 tttttggtcatcgcattttgatcagctcacgaaaattgttctacctcttttaaatcgaacaaaatcgtccctaaactatcatg 32305912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 267 - 361
Target Start/End: Complemental strand, 41834606 - 41834512
Alignment:
Q  267 aggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcctaaactatcatg 361  Q
    |||||| |||| | |||||||  ||| ||||||| || |||||||||||||| |||||||||| | || ||||||||||||||||||||||||||    
T  41834606 aggcttaattacacttttggtcctcgcattttgaccagctcacgaaaatggtcctgcctctttcagatcgaacaaaaccgtcctaaactatcatg 41834512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 28494886 - 28494937
Alignment:
Q  310 gaaaatggttctgcctcttttaaatggaacaaaaccgtcctaaactatcatg 361  Q
    |||||||||||||||||||| |||| ||||||||| ||||||||||||||||    
T  28494886 gaaaatggttctgcctctttcaaatcgaacaaaactgtcctaaactatcatg 28494937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 357
Target Start/End: Original strand, 4966829 - 4966906
Alignment:
Q  281 ttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    |||||||  ||| ||||||| |||||||||||||| || ||||||||||||||| |||||||| ||| ||||||||||    
T  4966829 ttttggtcctcgcattttgaccaactcacgaaaatagtactgcctcttttaaatcgaacaaaatcgtccctaaactat 4966906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 361
Target Start/End: Original strand, 10721787 - 10721879
Alignment:
Q  269 gcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcctaaactatcatg 361  Q
    |||| |||| |||||||||  ||  ||||||| || ||||||||||||||  || |||||| |||| |||||||| |||||||||||||||||    
T  10721787 gcttaattacatttttggtcctcacattttgaccagctcacgaaaatggtcttgtctctttcaaatcgaacaaaatcgtcctaaactatcatg 10721879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 15115612 - 15115556
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||| ||||||||||||||||| || |||||||||||| |||||||| ||||||    
T  15115612 attttgaccaactcacgaaaatggtcctacctcttttaaatcgaacaaaatcgtcct 15115556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 361
Target Start/End: Original strand, 22651351 - 22651439
Alignment:
Q  274 attatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc-taaactatcatg 361  Q
    |||| |||||||||  ||||||||||| || |||||| |||||||  ||||||||||||||  ||||||||| ||| ||||||||||||    
T  22651351 attacatttttggttctcgtattttgaccagctcacggaaatggtcatgcctcttttaaatcaaacaaaaccatccttaaactatcatg 22651439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 357
Target Start/End: Complemental strand, 32697780 - 32697682
Alignment:
Q  260 aaatagtaggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    |||||||| |||| |||| | ||||||| || | ||||||| |||||||||||| |||| || |||||||||||| ||||| || ||| ||||||||||    
T  32697780 aaatagtatgcttaattacacttttggtcattgcattttgaccaactcacgaaattggtcctacctcttttaaatcgaacagaatcgtccctaaactat 32697682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 22651831 - 22651767
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc-taaactat 357  Q
    ||||||| || ||||||||||||||||||||| ||| |||| |||||||| ||||| ||||||||    
T  22651831 attttgaccagctcacgaaaatggttctgcctttttcaaatcgaacaaaatcgtccataaactat 22651767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 27307568 - 27307516
Alignment:
Q  306 tcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc-taaactat 357  Q
    |||||||||||||||| ||||||| |||| |||||||||||||| ||||||||    
T  27307568 tcacgaaaatggttctccctctttcaaatcgaacaaaaccgtccataaactat 27307516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 349
Target Start/End: Original strand, 38900657 - 38900725
Alignment:
Q  281 ttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc 349  Q
    |||||||  ||| ||||||| ||||||||||||||| | || |||||||||||| |||||||| |||||    
T  38900657 ttttggtcctcgcattttgaccaactcacgaaaatgatcctacctcttttaaatcgaacaaaatcgtcc 38900725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 361
Target Start/End: Original strand, 13557018 - 13557085
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcctaaactatcatg 361  Q
    ||||||| || ||||||||||||||  ||||||||| ||||  ||||||| |||| ||||||||||||    
T  13557018 attttgaccagctcacgaaaatggtcatgcctctttcaaatcaaacaaaatcgtcttaaactatcatg 13557085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 348
Target Start/End: Original strand, 14340424 - 14340478
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtc 348  Q
    ||||||||||||||||||||||||| ||  || |||||||| |||||||| ||||    
T  14340424 attttgatcaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtc 14340478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 358
Target Start/End: Complemental strand, 17260753 - 17260675
Alignment:
Q  281 ttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactatc 358  Q
    |||||||  ||| ||||||| ||| ||||||||||| |||| ||||||| |||| |||||||||| | |||||||||||    
T  17260753 ttttggtcctcgcattttgaccaattcacgaaaatgattctacctctttcaaatcgaacaaaaccatccctaaactatc 17260675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 361
Target Start/End: Complemental strand, 20266448 - 20266367
Alignment:
Q  281 ttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactatcatg 361  Q
    |||||||  ||||||||||| || || |||||||||||  || |||||| |||| |||||||| ||| ||||||||||||||    
T  20266448 ttttggtcctcgtattttgaccagcttacgaaaatggtcatgtctctttcaaatcgaacaaaatcgtccctaaactatcatg 20266367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 4967291 - 4967227
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| |||||||| ||||||||  | |||||||||||| |||||||| ||| ||||||||||    
T  4967291 attttgaccaactcacaaaaatggtcttacctcttttaaatcgaacaaaatcgtccctaaactat 4967227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 357
Target Start/End: Complemental strand, 14340950 - 14340866
Alignment:
Q  274 attatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc-taaactat 357  Q
    |||| |||||||||| | | ||||||| |||||||||||| ||||  | | |||||||||| |||||||| ||||| ||||||||    
T  14340950 attacatttttggtacttgcattttgaccaactcacgaaattggtcatacatcttttaaatcgaacaaaatcgtccataaactat 14340866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 15029829 - 15029773
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||| |||||||||||||||||  | ||| |||||||| |||||||| ||||||    
T  15029829 attttgaccaactcacgaaaatggtcttaccttttttaaatcgaacaaaatcgtcct 15029773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 267 - 361
Target Start/End: Original strand, 17503973 - 17504067
Alignment:
Q  267 aggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcctaaactatcatg 361  Q
    |||||| |||||| | |||||  ||| ||||||| || |||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||    
T  17503973 aggcttaattatactgttggtcctcgcattttgaccatctcacgaaaatggtcctgcctctttcaaatggaacataaccgtcctaaactatcatg 17504067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 361
Target Start/End: Complemental strand, 35193822 - 35193755
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcctaaactatcatg 361  Q
    |||||||| | |||||||||||||| |||||||||| ||||  |||||||||||||||||||||||||    
T  35193822 attttgataagctcacgaaaatggtcctgcctctttcaaatctaacaaaaccgtcctaaactatcatg 35193755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 361
Target Start/End: Complemental strand, 40160610 - 40160543
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcctaaactatcatg 361  Q
    ||||||| |||||||||||||| ||  ||||||||| |||| ||||||||||||||||||||||||||    
T  40160610 attttgaccaactcacgaaaatagtcatgcctctttcaaattgaacaaaaccgtcctaaactatcatg 40160543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 349
Target Start/End: Complemental strand, 30598065 - 30597984
Alignment:
Q  268 ggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc 349  Q
    |||||||||| | |||||||  |||| |||||| ||||||||| || |||||||| ||||||||||| |||||||| |||||    
T  30598065 ggcttgattacacttttggtcctcgtgttttgaccaactcacggaattggttctgtctcttttaaatcgaacaaaatcgtcc 30597984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 357
Target Start/End: Complemental strand, 55677505 - 55677414
Alignment:
Q  267 aggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtc-ctaaactat 357  Q
    |||||| |||| | |||||||  | ||||||||| |||||||||||| |||| || |||||||||||| |||||||| |||| |||||||||    
T  55677505 aggcttaattacacttttggtccttgtattttgaccaactcacgaaattggtcctacctcttttaaatcgaacaaaatcgtctctaaactat 55677414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 361
Target Start/End: Original strand, 229174 - 229255
Alignment:
Q  281 ttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc-taaactatcatg 361  Q
    |||||||  ||||||||||| || ||| ||||||||||  ||||||||| |||| |||||||| ||||| ||||||||||||    
T  229174 ttttggtcctcgtattttgaccagctcgcgaaaatggtcttgcctctttcaaattgaacaaaatcgtccttaaactatcatg 229255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 24336272 - 24336215
Alignment:
Q  305 ctcacgaaaatggttctgcctcttttaaatggaacaaaaccg-tcctaaactatcatg 361  Q
    |||||||||||||| |||||||||| |||| ||||||||||| ||||||| |||||||    
T  24336272 ctcacgaaaatggtcctgcctctttcaaatcgaacaaaaccgttcctaaattatcatg 24336215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 17504479 - 17504423
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||| || |||||||||||||| ||  ||||||||||| |||||||||||||||    
T  17504479 attttgaacagctcacgaaaatggtcctatctcttttaaatcgaacaaaaccgtcct 17504423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 34807113 - 34807197
Alignment:
Q  265 gtaggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc 349  Q
    |||||||| |||| | |||||||  | | |||||||||||||||||||| ||||  | |||||||||||| |||||||| |||||    
T  34807113 gtaggcttaattacacttttggtccttgcattttgatcaactcacgaaattggtcatacctcttttaaatcgaacaaaatcgtcc 34807197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 35193334 - 35193398
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    |||||||||| |||||||||||||| || ||||||| |||| |||||||| ||| ||||||||||    
T  35193334 attttgatcagctcacgaaaatggtcctacctctttcaaatcgaacaaaatcgtccctaaactat 35193398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 46737175 - 46737111
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| |||||||||||| |||| || |||||||||||| |||||||| ||| ||||||||||    
T  46737175 attttgaccaactcacgaaattggtcctacctcttttaaatcgaacaaaatcgtccctaaactat 46737111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 54440597 - 54440661
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| |||||||||||| |||| || |||||||||||| |||||||| ||| ||||||||||    
T  54440597 attttgaccaactcacgaaattggtcctacctcttttaaatcgaacaaaatcgtccctaaactat 54440661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 324
Target Start/End: Complemental strand, 44892692 - 44892637
Alignment:
Q  269 gcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcc 324  Q
    |||| ||||||||||||||  |||| |||||| | |||||||||||||||||||||    
T  44892692 gcttaattatatttttggtcctcgtgttttgacctactcacgaaaatggttctgcc 44892637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 45838571 - 45838637
Alignment:
Q  292 gtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||||| ||||||||| || |||| || |||||||||||| |||||||| ||| ||||||||||    
T  45838571 gtattttgaccaactcacgtaattggtcctacctcttttaaatcgaacaaaatcgtccctaaactat 45838637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 361
Target Start/End: Complemental strand, 229692 - 229611
Alignment:
Q  281 ttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc-taaactatcatg 361  Q
    |||||||  ||| ||||||| || ||||||||||||||  ||||||||| ||||  ||||||| ||||| ||||||||||||    
T  229692 ttttggtcttcgcattttgaccagctcacgaaaatggtcttgcctctttcaaatcaaacaaaatcgtccttaaactatcatg 229611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 347
Target Start/End: Original strand, 24335787 - 24335840
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt 347  Q
    ||||||| || ||||||||||||||  ||||||||| |||| ||||||||||||    
T  24335787 attttgaccagctcacgaaaatggtcatgcctctttcaaatcgaacaaaaccgt 24335840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 34789903 - 34789854
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaa 343  Q
    ||||||| |||||||||||| |||| || |||||||||||| ||||||||    
T  34789903 attttgaccaactcacgaaattggtcctacctcttttaaatcgaacaaaa 34789854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 40160131 - 40160184
Alignment:
Q  305 ctcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||||||| ||  |||||||||||||| |||||||||||| ||||||||||    
T  40160131 ctcacgaaaatagtcatgcctcttttaaatcgaacaaaaccgtccctaaactat 40160184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 51310014 - 51309957
Alignment:
Q  305 ctcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactatcatg 361  Q
    ||||||||||||||  ||||||||| |||| ||||||||| || ||||||||||||||    
T  51310014 ctcacgaaaatggtcatgcctctttcaaatcgaacaaaacagtccctaaactatcatg 51309957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 21034261 - 21034317
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||| ||||||||||||||||| ||  || |||||||| |||||||| ||||||    
T  21034261 attttgaccaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtcct 21034317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 361
Target Start/End: Original strand, 23986546 - 23986614
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactatcatg 361  Q
    ||||||| || ||||||||||||||  || |||||| |||| ||||||||| || ||||||||||||||    
T  23986546 attttgaccagctcacgaaaatggtcatgtctctttcaaatcgaacaaaactgtccctaaactatcatg 23986614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 24851342 - 24851398
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||| ||||||||||||||||| ||  || |||||||| |||||||| ||||||    
T  24851342 attttgaccaactcacgaaaatggtgctatcttttttaaattgaacaaaatcgtcct 24851398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 24851986 - 24851922
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| |||||||||||| || | || |||||||||||| |||||||| ||| ||||||||||    
T  24851986 attttgaccaactcacgaaattgatcctacctcttttaaatcgaacaaaatcgtccctaaactat 24851922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 28465601 - 28465545
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||| ||||||||||||||||| ||  || |||||||| |||||||| ||||||    
T  28465601 attttgaccaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtcct 28465545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 33689855 - 33689911
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||| |||||||| ||| |||| || |||||||||||| |||||||| ||||||    
T  33689855 attttgaccaactcacaaaattggtcctacctcttttaaatcgaacaaaatcgtcct 33689911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 34789408 - 34789464
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||| ||||||||||||||||| ||  || |||||||| |||||||| ||||||    
T  34789408 attttgaccaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtcct 34789464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 350
Target Start/End: Complemental strand, 34807679 - 34807603
Alignment:
Q  274 attatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||||||||||  |  |||||||||||||||||||||||  ||||  || |||||| | |||||||| ||||||    
T  34807679 attatatttttggtcttattattttgatcaactcacgaaaattattctatcttttttaattcgaacaaaatcgtcct 34807603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 54441089 - 54441033
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    |||||||||| |||||||||||||| ||  || |||||||| |||||||| ||||||    
T  54441089 attttgatcagctcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtcct 54441033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 283 - 361
Target Start/End: Original strand, 17088161 - 17088239
Alignment:
Q  283 ttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcctaaactatcatg 361  Q
    ||||| |||| ||||||| || ||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  17088161 ttggtcatcgcattttgaccagctcacgaaaatggttttgcctctttcaaatcgaacaaaaccgtcctaaactatcatg 17088239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 48174246 - 48174174
Alignment:
Q  290 tcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactatcatg 361  Q
    |||||||||||||| |||||||||| ||||||| |||||||||||  ||||||||||| ||||||||||||||    
T  48174246 tcgtattttgatcagctcacgaaaacggttctgtctcttttaaatcaaacaaaaccgtccctaaactatcatg 48174174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 361
Target Start/End: Complemental strand, 39485584 - 39485491
Alignment:
Q  268 ggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcctaaactatcatg 361  Q
    ||||| |||||| ||||| |  ||| ||||| |||| |||| |||||||||||||||||||| ||||  |||||||| ||||||||||||||||    
T  39485584 ggcttaattatacttttgatcctcgcattttaatcagctcatgaaaatggttctgcctctttcaaatcaaacaaaactgtcctaaactatcatg 39485491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 360
Target Start/End: Complemental strand, 50926789 - 50926694
Alignment:
Q  266 taggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactatcat 360  Q
    ||||||| |||| | ||||||| |||| ||||||| || |||||||||||||| | | |||||| |||| |||||||||||| |||||||||||||    
T  50926789 taggcttaattacacttttggtcatcgcattttgaccagctcacgaaaatggtcccgtctctttcaaatcgaacaaaaccgtccctaaactatcat 50926694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 361
Target Start/End: Original strand, 44291327 - 44291395
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc-taaactatcatg 361  Q
    ||||||| || ||||||||||||||| ||||||||| |||| |||||||| ||||| ||||||||||||    
T  44291327 attttgaccagctcacgaaaatggttatgcctctttcaaattgaacaaaatcgtccataaactatcatg 44291395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 45048181 - 45048245
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc-taaactat 357  Q
    ||||||| ||||| |||||||||||||| |||||||||||| |||||||| ||||| ||||||||    
T  45048181 attttgaccaacttacgaaaatggttctacctcttttaaattgaacaaaatcgtccataaactat 45048245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 360
Target Start/End: Complemental strand, 23527050 - 23526983
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtc-ctaaactatcat 360  Q
    |||||||||| |||| |||||||||  ||||| |||||||| ||||||||||||| ||||||||||||    
T  23527050 attttgatcagctcatgaaaatggtcatgccttttttaaatcgaacaaaaccgtctctaaactatcat 23526983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 357
Target Start/End: Complemental strand, 17641902 - 17641825
Alignment:
Q  281 ttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    |||||||  ||| ||||||| |||||||||||||||||  | |||||||||||| |||||||| ||| ||||||||||    
T  17641902 ttttggtcctcgcattttgaccaactcacgaaaatggtcatacctcttttaaatcgaacaaaatcgtccctaaactat 17641825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 23526684 - 23526733
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaa 343  Q
    ||||||| || |||||||||||||| ||||||||||||||| ||||||||    
T  23526684 attttgaccagctcacgaaaatggtcctgcctcttttaaatcgaacaaaa 23526733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 357
Target Start/End: Original strand, 50304452 - 50304529
Alignment:
Q  281 ttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtc-ctaaactat 357  Q
    |||||||  ||| ||||||| |||||||||||||||||  | |||||||||||| |||||||| |||| |||||||||    
T  50304452 ttttggtcctcgcattttgaccaactcacgaaaatggtcatacctcttttaaatcgaacaaaatcgtctctaaactat 50304529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 8229663 - 8229727
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtc-ctaaactat 357  Q
    ||||||||||||||||||||||| |||| | |||||||||| ||| |||| |||| |||||||||    
T  8229663 attttgatcaactcacgaaaatgattctacatcttttaaatcgaataaaatcgtctctaaactat 8229727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 357
Target Start/End: Complemental strand, 8230181 - 8230097
Alignment:
Q  274 attatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    |||| |||||||||  ||| ||||||| | | |||||||||||||| | |||||||||||| |||||||| ||| ||||||||||    
T  8230181 attacatttttggttctcgcattttgacctattcacgaaaatggttatacctcttttaaatcgaacaaaatcgtccctaaactat 8230097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 356
Target Start/End: Original strand, 25274769 - 25274845
Alignment:
Q  281 ttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccg-tcctaaacta 356  Q
    |||||||  ||| ||||||| || ||||||||||||||  ||||||||| |||| ||||||||||| ||||||||||    
T  25274769 ttttggtcctcgcattttgaccagctcacgaaaatggtcatgcctctttcaaatcgaacaaaaccgttcctaaacta 25274845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 37505093 - 37505149
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||| ||||||||||||||||||||  || |||||||| |||||||| ||||||    
T  37505093 attttgaccaactcacgaaaatggttctatcttttttaaatcgaacaaaatcgtcct 37505149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 361
Target Start/End: Complemental strand, 45048668 - 45048588
Alignment:
Q  281 ttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcctaaactatcatg 361  Q
    |||||||  ||| ||||||| ||  |||||||||||||  | |||||||  ||| ||||||||||||||||||||||||||    
T  45048668 ttttggtcctcgcattttgaccagttcacgaaaatggtcatacctctttccaatcgaacaaaaccgtcctaaactatcatg 45048588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 2868228 - 2868173
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc 349  Q
    ||||||| |||| |||||||||||| || |||||||||||| |||||||| |||||    
T  2868228 attttgaccaacacacgaaaatggtcctacctcttttaaatcgaacaaaatcgtcc 2868173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 29438956 - 29439011
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc 349  Q
    ||||||| |||||||||||| |||| || |||||||||||| |||||||| |||||    
T  29438956 attttgaccaactcacgaaattggtcctacctcttttaaatcgaacaaaatcgtcc 29439011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 30786797 - 30786862
Alignment:
Q  294 attttgatcaactcacgaaaat-ggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| |||||||||||||| ||| || |||||||||||| |||||||| ||| ||||||||||    
T  30786797 attttgaccaactcacgaaaattggtcctacctcttttaaatcgaacaaaatcgtccctaaactat 30786862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 10278574 - 10278638
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| |||||||||||| || | || |||||||||||| |||||||| ||| ||||||||||    
T  10278574 attttgaccaactcacgaaattgatcctacctcttttaaatcgaacaaaatcgtccctaaactat 10278638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 16298708 - 16298772
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| |||||||||||| ||||  | |||||||||||| |||||||| ||| ||||||||||    
T  16298708 attttgaccaactcacgaaattggtcatacctcttttaaatcgaacaaaatcgtccctaaactat 16298772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 17088659 - 17088595
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| || ||||||||||||||  ||||||||| ||||  ||||||||||| ||||||||||    
T  17088659 attttgaacagctcacgaaaatggtcatgcctctttcaaatcaaacaaaaccgtccctaaactat 17088595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 29439442 - 29439386
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||||||||||||||||||| | ||  || |||||||| |||||||| ||||||    
T  29439442 attttgatcaactcacgaaaatgatcctatcttttttaaatcgaacaaaatcgtcct 29439386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 34555902 - 34555846
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||| ||||||||||||||||| ||  || |||||||| |||||||| ||||||    
T  34555902 attttgaccaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtcct 34555846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 50419793 - 50419725
Alignment:
Q  281 ttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc 349  Q
    ||||||| |||| |||| || |||||||||||| |||| |||||| ||| |||| ||||||||| ||||    
T  50419793 ttttggtcatcgcatttagaccaactcacgaaattggtcctgcctttttaaaattgaacaaaacggtcc 50419725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 52336030 - 52335966
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| ||||||| |||| |||| || |||||||||||| |||||||| ||| ||||||||||    
T  52336030 attttgaccaactcatgaaattggtcctacctcttttaaatcgaacaaaatcgtccctaaactat 52335966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 266 - 357
Target Start/End: Complemental strand, 11540186 - 11540094
Alignment:
Q  266 taggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc-taaactat 357  Q
    ||||||| |||||| ||||||| |||| ||||||| ||||||||||||||||| || |||||||||||| |||||||| ||||| ||||||||    
T  11540186 taggcttaattatacttttggtcatcgcattttgaccaactcacgaaaatggtcctacctcttttaaatcgaacaaaatcgtccataaactat 11540094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 267 - 349
Target Start/End: Complemental strand, 42192790 - 42192708
Alignment:
Q  267 aggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc 349  Q
    |||||| |||| | |||||||  ||| ||||||| ||||||||||||||||| || |||||||||||| |||||||| |||||    
T  42192790 aggcttaattacacttttggtcctcgcattttgaccaactcacgaaaatggtcctacctcttttaaatcgaacaaaatcgtcc 42192708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 361
Target Start/End: Complemental strand, 28143562 - 28143481
Alignment:
Q  281 ttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactatcatg 361  Q
    |||||||  ||| ||||||| || |||||||||||||| |||||||||| |||| |||||||| ||| ||||||||||||||    
T  28143562 ttttggtcctcgcattttgaccagctcacgaaaatggtcctgcctctttcaaatcgaacaaaatcgtccctaaactatcatg 28143481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 42192266 - 42192330
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| ||||||||||||||||| || |||||||||||| |||||||| ||| ||||||||||    
T  42192266 attttgaccaactcacgaaaatggtcctacctcttttaaatcgaacaaaatcgtccctaaactat 42192330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 357
Target Start/End: Complemental strand, 63504 - 63420
Alignment:
Q  274 attatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||||||||||  | ||||||||| |||||||||||||||||  |  |||||||||||  ||||||| ||| ||||||||||    
T  63504 attatatttttggtccttgtattttgaccaactcacgaaaatggtcttatctcttttaaatcaaacaaaatcgtccctaaactat 63420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 360
Target Start/End: Original strand, 20495206 - 20495286
Alignment:
Q  281 ttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactatcat 360  Q
    |||||||  ||| ||||||| ||||||||||||||| |  ||||||||||||||  ||||||| ||| |||||||||||||    
T  20495206 ttttggttctcgcattttgaccaactcacgaaaatgatcatgcctcttttaaatctaacaaaatcgtccctaaactatcat 20495286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 31797297 - 31797233
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| || ||||||||||||||  ||||||||| |||| |||||||||||| ||||||||||    
T  31797297 attttgaccagctcacgaaaatggtcatgcctctttcaaatcgaacaaaaccgtccctaaactat 31797233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 38007976 - 38008040
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| |||||||||||| |||| || |||||||||||| |||||||| ||| ||||||||||    
T  38007976 attttgaccaactcacgaaattggtcctacctcttttaaatcgaacaaaatcgtccctaaactat 38008040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 43160035 - 43160099
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    |||||||||||||||||||| ||||  | |||||||||||| |||||||| ||| ||||||||||    
T  43160035 attttgatcaactcacgaaattggtcatacctcttttaaatcgaacaaaatcgtccctaaactat 43160099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 357
Target Start/End: Complemental strand, 43216228 - 43216165
Alignment:
Q  295 ttttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    |||||| |||||||||||| |||| || |||||||||||| |||||||| ||| ||||||||||    
T  43216228 ttttgaccaactcacgaaattggtcctacctcttttaaatcgaacaaaatcgtccctaaactat 43216165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 5035903 - 5035956
Alignment:
Q  308 acgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactatcat 360  Q
    ||||||||||| ||| || |||||||| |||||||||||| |||||||||||||    
T  5035903 acgaaaatggtcctgtcttttttaaatcgaacaaaaccgtccctaaactatcat 5035956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 62983 - 63039
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||| ||||||||||||||||| || ||| ||| |||| |||||||| ||||||    
T  62983 attttgaccaactcacgaaaatggtcctacctttttaaaatcgaacaaaatcgtcct 63039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 4808905 - 4808969
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc-taaactat 357  Q
    ||||||| |||||||||||| || | || |||||||||||| |||||||| ||||| ||||||||    
T  4808905 attttgaccaactcacgaaattgatcctacctcttttaaatcgaacaaaatcgtccataaactat 4808969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 6949964 - 6949900
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| |||||||||||| |||| || | |||||||||| |||||||| ||| ||||||||||    
T  6949964 attttgaccaactcacgaaattggtcctacatcttttaaatagaacaaaatcgtccctaaactat 6949900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 14942397 - 14942317
Alignment:
Q  263 tagtaggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaa 343  Q
    |||||||||| |||| | |||||||  ||| ||||||| || ||||||||||||||  || |||||| |||| ||||||||    
T  14942397 tagtaggcttaattacacttttggtcttcgcattttgaccagctcacgaaaatggtcttgtctctttcaaatcgaacaaaa 14942317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 357
Target Start/End: Original strand, 15550707 - 15550763
Alignment:
Q  302 caactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    |||||||||||| |||| || |||||||||||| |||||||| ||| ||||||||||    
T  15550707 caactcacgaaattggtcctacctcttttaaatcgaacaaaatcgtccctaaactat 15550763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 357
Target Start/End: Complemental strand, 24140230 - 24140130
Alignment:
Q  258 aaaaatagtaggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc-taaacta 356  Q
    ||||||| ||||||| |||| | ||||| |  ||| || |||| ||||||||||||||||| || ||| ||||||||  ||||||| ||||| |||||||    
T  24140230 aaaaatattaggcttaattacacttttgttcctcgcatcttgaccaactcacgaaaatggtcctaccttttttaaatcaaacaaaatcgtccataaacta 24140131  T
Q  357 t 357  Q
    |    
T  24140130 t 24140130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 32418666 - 32418610
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||| ||| |||||||| || |||| |||||||||||| |||||||| ||||||    
T  32418666 attttgaccaattcacgaaattgattctacctcttttaaatcgaacaaaatcgtcct 32418610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 38008471 - 38008415
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||| ||||||||||||||||| ||  || |||||||| |||||||| ||||||    
T  38008471 attttgaccaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtcct 38008415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 294 - 361
Target Start/End: Complemental strand, 205887 - 205819
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactatcatg 361  Q
    ||||||| ||||||||||||||||| |||||||||| |||| |||||||||||| ||||||||||||||    
T  205887 attttgaccaactcacgaaaatggtcctgcctctttcaaatcgaacaaaaccgtccctaaactatcatg 205819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 360
Target Start/End: Complemental strand, 210857 - 210790
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactatcat 360  Q
    ||||||| ||||||| ||||||||| |||||||||| |||| |||||||||||| |||||||||||||    
T  210857 attttgaccaactcatgaaaatggtcctgcctctttcaaatcgaacaaaaccgtccctaaactatcat 210790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 267 - 357
Target Start/End: Complemental strand, 2758245 - 2758154
Alignment:
Q  267 aggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc-taaactat 357  Q
    |||||| |||| | |||||||  ||| |||||| ||||||||||||||||||||| |||||||||||| |||||||| ||||| ||||||||    
T  2758245 aggcttaattacacttttggtcctcgcattttgttcaactcacgaaaatggttctacctcttttaaatcgaacaaaatcgtccataaactat 2758154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 361
Target Start/End: Original strand, 9393762 - 9393829
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcctaaactatcatg 361  Q
    |||||||||| ||||||||||| ||  ||||||||| |||| ||||||||||||||||||||||||||    
T  9393762 attttgatcagctcacgaaaattgtcttgcctctttcaaatcgaacaaaaccgtcctaaactatcatg 9393829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 361
Target Start/End: Complemental strand, 35579405 - 35579338
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcctaaactatcatg 361  Q
    |||||||||| |||||||||||| || ||||||||| ||||  |||||||||||||||||||||||||    
T  35579405 attttgatcagctcacgaaaatgattatgcctctttcaaatcaaacaaaaccgtcctaaactatcatg 35579338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 357
Target Start/End: Complemental strand, 787319 - 787242
Alignment:
Q  281 ttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    |||||||  ||||||||||| ||||||||||||||||| || |||||||||||| |||||||| ||| ||||||||||    
T  787319 ttttggtgctcgtattttgaccaactcacgaaaatggtcctacctcttttaaatcgaacaaaatcgtccctaaactat 787242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 350
Target Start/End: Original strand, 7732486 - 7732570
Alignment:
Q  266 taggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||| |||| |||||||||  | | |||||||||||||||||||| |||| || |||||||||||| |||||||| ||||||    
T  7732486 taggcttaattacatttttggtccttgcattttgatcaactcacgaaattggtcctacctcttttaaatcgaacaaaatcgtcct 7732570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 361
Target Start/End: Complemental strand, 34595292 - 34595224
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactatcatg 361  Q
    ||||||| ||||||||||||||||| |||| |||||||||| |||||||| ||| ||||||||||||||    
T  34595292 attttgaccaactcacgaaaatggtcctgcatcttttaaatcgaacaaaatcgtccctaaactatcatg 34595224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 361
Target Start/End: Complemental strand, 45815566 - 45815519
Alignment:
Q  314 atggttctgcctcttttaaatggaacaaaaccgtcctaaactatcatg 361  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||    
T  45815566 atggttctgcctcttttaaatcgaacaaaatcgtcctaaactatcatg 45815519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 349
Target Start/End: Original strand, 33880631 - 33880701
Alignment:
Q  279 atttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc 349  Q
    |||||||||  ||||||||||| || ||||| ||||| ||||||||||||| |||| ||||||||||||||    
T  33880631 atttttggtcctcgtattttgaccagctcacaaaaattgttctgcctctttcaaatcgaacaaaaccgtcc 33880701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 361
Target Start/End: Original strand, 35578912 - 35578992
Alignment:
Q  281 ttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcctaaactatcatg 361  Q
    ||||||| || | ||||||| || ||||| |||||||| ||||| |||| |||| ||||||||||||| ||||||||||||    
T  35578912 ttttggtcattgcattttgaccagctcacaaaaatggtcctgccactttcaaatcgaacaaaaccgtcataaactatcatg 35578992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 361
Target Start/End: Original strand, 39136712 - 39136780
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactatcatg 361  Q
    ||||||| || |||||||||||||||||| |||||| |||| |||||||| ||| ||||||||||||||    
T  39136712 attttgaccagctcacgaaaatggttctgactctttcaaatcgaacaaaatcgtccctaaactatcatg 39136780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 349
Target Start/End: Complemental strand, 39137057 - 39136998
Alignment:
Q  290 tcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc 349  Q
    ||||||||||| |  |||||||||||||| ||||||||||||||| |||||||| |||||    
T  39137057 tcgtattttgacccgctcacgaaaatggtcctgcctcttttaaatcgaacaaaatcgtcc 39136998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 361
Target Start/End: Original strand, 49064033 - 49064128
Alignment:
Q  267 aggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc-taaactatcatg 361  Q
    |||||| |||| | |||||||  ||||||||||| || ||||||||||||||  ||||||||| |||| |||||||| | ||| ||||||||||||    
T  49064033 aggcttaattacacttttggtcctcgtattttgaccagctcacgaaaatggtattgcctctttcaaatagaacaaaatcttccataaactatcatg 49064128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 361
Target Start/End: Original strand, 4477728 - 4477796
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactatcatg 361  Q
    ||||||| ||| ||||||||||||| | ||||||||||||| ||| |||| ||| ||||||||||||||    
T  4477728 attttgaccaattcacgaaaatggtcccgcctcttttaaattgaataaaatcgtccctaaactatcatg 4477796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 5333906 - 5333970
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| |||||||||||||||||  | |||||||||||| |||||||| ||| ||||||||||    
T  5333906 attttgaccaactcacgaaaatggtcgtacctcttttaaatcgaacaaaatcgtccctaaactat 5333970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 5334339 - 5334275
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| |||||||||||||| || || |||||||||||| |||||||| ||| ||||||||||    
T  5334339 attttgaccaactcacgaaaatagtcctacctcttttaaatcgaacaaaatcgtccctaaactat 5334275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 27245724 - 27245668
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||||||||||||||||||||| ||  || |||||||| |||||||| ||||||    
T  27245724 attttgatcaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtcct 27245668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 27245229 - 27245284
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc 349  Q
    ||||||| |||||||||||| |||| || |||||||||||| |||||||| |||||    
T  27245229 attttgaccaactcacgaaattggtcctacctcttttaaatcgaacaaaatcgtcc 27245284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 48247613 - 48247668
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc 349  Q
    |||||||||||||||||||| |||| || ||||||||||||  ||||||| |||||    
T  48247613 attttgatcaactcacgaaattggtcctacctcttttaaatcaaacaaaatcgtcc 48247668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 5746160 - 5746097
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc-taaactat 357  Q
    |||||||  ||||||||||| || | ||||||||||||||| |||||||||||||| ||||||||    
T  5746160 attttgactaactcacgaaattgat-ctgcctcttttaaatcgaacaaaaccgtccataaactat 5746097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 9181558 - 9181614
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||| ||||||||||||||||| ||  || |||||||| |||||||| ||||||    
T  9181558 attttgaccaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtcct 9181614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 15712391 - 15712447
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||| ||||||||||||||||| ||  || |||||||| |||||||| ||||||    
T  15712391 attttgaccaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtcct 15712447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 25637718 - 25637662
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||| ||||||||||||||||| ||  || |||||||| |||||||| ||||||    
T  25637718 attttgaccaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtcct 25637662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 28687619 - 28687675
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||| ||||||||||||||||||||  || || ||||| |||||||| ||||||    
T  28687619 attttgaccaactcacgaaaatggttctatcttttataaatcgaacaaaatcgtcct 28687675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 35161322 - 35161258
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| ||||||||| || |||| || |||||||||||| |||||||| ||| ||||||||||    
T  35161322 attttgaccaactcacggaattggtcctacctcttttaaatcgaacaaaatcgtccctaaactat 35161258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 39388788 - 39388724
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtc-ctaaactat 357  Q
    ||||||| |||||||||||| | || || |||||||||||| |||||||| |||| |||||||||    
T  39388788 attttgaccaactcacgaaatttgtcctacctcttttaaatcgaacaaaatcgtctctaaactat 39388724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 45815383 - 45815435
Alignment:
Q  310 gaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactatcatg 361  Q
    |||||||||  ||||||||| |||| |||||||||||| ||||||||||||||    
T  45815383 gaaaatggtcatgcctctttcaaatcgaacaaaaccgtccctaaactatcatg 45815435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 268 - 361
Target Start/End: Complemental strand, 15644 - 15550
Alignment:
Q  268 ggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactatcatg 361  Q
    ||||| |||| |||||||||  ||| |||||||||| |||||||||||||| ||| |||||| |||| ||||||||| || ||||||||||||||    
T  15644 ggcttaattagatttttggttctcgcattttgatcagctcacgaaaatggtcctgactctttcaaatcgaacaaaactgtccctaaactatcatg 15550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 15112 - 15188
Alignment:
Q  267 aggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaa 343  Q
    |||||| |||||| ||||||| |||| ||||||| || ||| |||||||| |||||||||||| |||| ||||||||    
T  15112 aggcttaattatacttttggtcatcgcattttgaccagctcgcgaaaatgattctgcctctttcaaatcgaacaaaa 15188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 349
Target Start/End: Original strand, 7910615 - 7910697
Alignment:
Q  267 aggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc 349  Q
    |||||| |||| |||||||||  ||  |||||||||||||||||||||||||| | |||||||||||| |||||||| |||||    
T  7910615 aggcttaattacatttttggtcctcacattttgatcaactcacgaaaatggttatacctcttttaaatcgaacaaaatcgtcc 7910697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 349
Target Start/End: Complemental strand, 35427366 - 35427277
Alignment:
Q  260 aaatagtaggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc 349  Q
    ||||| ||||||| |||| | |||||||  ||| ||||||| |||||||||||||||||||| |||||||||||  |||||||| |||||    
T  35427366 aaatattaggcttaattacacttttggtcctcgcattttgaccaactcacgaaaatggttctacctcttttaaaccgaacaaaatcgtcc 35427277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 7911136 - 7911072
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| |||||||||||||||||||| |||||||||||| |||||||| ||| ||||||||||    
T  7911136 attttgaccaactcacgaaaatggttctacctcttttaaatcgaacaaaatcgtccctaaactat 7911072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 42035798 - 42035862
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc-taaactat 357  Q
    ||||||| |||||||||||||||||||| |||||||||||| |||||||| ||||| ||||||||    
T  42035798 attttgaccaactcacgaaaatggttctacctcttttaaatcgaacaaaatcgtccataaactat 42035862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 361
Target Start/End: Original strand, 28876916 - 28876997
Alignment:
Q  281 ttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactatcatg 361  Q
    |||||||  ||| |||||||||| |||||||||||  |||||||||||| |||| |||||||| ||| ||||||||||||||    
T  28876916 ttttggtcctcgcattttgatcagctcacgaaaataattctgcctctttcaaatcgaacaaaatcgtccctaaactatcatg 28876997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 357
Target Start/End: Complemental strand, 6115659 - 6115567
Alignment:
Q  266 taggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| |||||| |||||||  | ||||||||| |||||| ||||| |||| || |||||||||||| |||||||| ||| ||||||||||    
T  6115659 taggcttaattatacttttggtccttgtattttgaccaactcgcgaaattggtcctacctcttttaaatcgaacaaaatcgtccctaaactat 6115567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 357
Target Start/End: Complemental strand, 41260809 - 41260717
Alignment:
Q  266 taggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| |||||| ||||||| || | |||||||||||||||||||| || |  | |||||||||||| |||||||| ||| ||||||||||    
T  41260809 taggcttaattatacttttggtcattgcattttgatcaactcacgaaattgatcatacctcttttaaatcgaacaaaatcgtccctaaactat 41260717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 349
Target Start/End: Original strand, 16578106 - 16578189
Alignment:
Q  266 taggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcc 349  Q
    ||||||| |||| |||||||||  | | ||||||| |||||||||||| |||| || |||||||||||| |||||||| |||||    
T  16578106 taggcttaattacatttttggttcttgcattttgaccaactcacgaaattggtcctacctcttttaaatcgaacaaaatcgtcc 16578189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 15255879 - 15255943
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| |||||||||||| |||| || |||||||||||| |||||||| ||| ||||||||||    
T  15255879 attttgaccaactcacgaaattggtcctacctcttttaaatcgaacaaaatcgtccctaaactat 15255943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 18049616 - 18049672
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||| ||||||||||||||||||||  || |||||||| |||||||| ||||||    
T  18049616 attttgaccaactcacgaaaatggttctatcttttttaaatcgaacaaaatcgtcct 18049672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 28254451 - 28254507
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||||||||||||||||||||| ||  || |||||||| |||||||| ||||||    
T  28254451 attttgatcaactcacgaaaatggtcctatctattttaaattgaacaaaatcgtcct 28254507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 28254946 - 28254882
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| |||||||||||| |||| || |||||||||||| |||||||| ||| ||||||||||    
T  28254946 attttgaccaactcacgaaattggtcctacctcttttaaatcgaacaaaatcgtccctaaactat 28254882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 361
Target Start/End: Complemental strand, 28877422 - 28877342
Alignment:
Q  281 ttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcctaaactatcatg 361  Q
    |||||||  ||| ||||||| |||||||||||||||||| | ||||||| |||| ||||||||  ||||  ||||||||||    
T  28877422 ttttggtcctcgcattttgaccaactcacgaaaatggttatacctctttcaaattgaacaaaattgtccctaactatcatg 28877342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 599531 - 599607
Alignment:
Q  267 aggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaa 343  Q
    |||||| |||| |||||||||  | | ||||||| |||||||||||| ||||  | |||||||||||| ||||||||    
T  599531 aggcttaattacatttttggtccttgcattttgaccaactcacgaaattggtcatacctcttttaaatcgaacaaaa 599607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 18050111 - 18050047
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| |||||||||||| ||||  | |||||||||||| |||||||| ||| ||||||||||    
T  18050111 attttgaccaactcacgaaattggtcatacctcttttaaatcgaacaaaatcgtccctaaactat 18050047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 18428282 - 18428226
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||| ||||||||||||||||| ||  || |||||||| |||||||| ||||||    
T  18428282 attttgaccaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtcct 18428226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 361
Target Start/End: Original strand, 32836033 - 32836100
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcctaaactatcatg 361  Q
    ||||||| || ||||| |||| ||| |||||||||| |||| ||||||||||||||||||||||||||    
T  32836033 attttgaccagctcacaaaaacggtcctgcctctttcaaatcgaacaaaaccgtcctaaactatcatg 32836100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 361
Target Start/End: Original strand, 35163210 - 35163277
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcctaaactatcatg 361  Q
    ||||||| || ||||| ||||||||  || |||||| |||| ||||||||||||||||||||||||||    
T  35163210 attttgaccagctcacaaaaatggtcttgtctctttcaaatcgaacaaaaccgtcctaaactatcatg 35163277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 357
Target Start/End: Original strand, 28636292 - 28636382
Alignment:
Q  268 ggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccg-tcctaaactat 357  Q
    ||||| |||| ||||||||| || ||||||||| |||||||||||| ||||  | | |||||||||| |||||||| || |||||||||||    
T  28636292 ggcttaattacatttttggtcattgtattttgaccaactcacgaaattggtcttacttcttttaaatcgaacaaaatcgttcctaaactat 28636382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 5114494 - 5114550
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||||||||||||||||||||| ||  || |||||||| |||||||| ||||||    
T  5114494 attttgatcaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtcct 5114550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 24640705 - 24640649
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||||||||||||||||||||| ||  || |||||||| |||||||| ||||||    
T  24640705 attttgatcaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtcct 24640649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 35163707 - 35163643
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactat 357  Q
    ||||||| || ||||||||||||||||||||||||| ||||  ||||||| ||| ||||||||||    
T  35163707 attttgaccagctcacgaaaatggttctgcctctttcaaatcaaacaaaatcgtccctaaactat 35163643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 22534270 - 22534213
Alignment:
Q  268 ggcttgattatatttttggtaatcgtattttgatcaactcacgaaaatggttctgcct 325  Q
    ||||| |||| | |||||||  ||||||||||| ||||||||||||||||| ||||||    
T  22534270 ggcttaattacacttttggtcctcgtattttgaccaactcacgaaaatggtcctgcct 22534213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 347
Target Start/End: Complemental strand, 32836516 - 32836463
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgt 347  Q
    ||||||| || ||||||||||||||  ||||||||| |||| ||||||||||||    
T  32836516 attttgaccagctcacgaaaatggtcatgcctctttcaaatcgaacaaaaccgt 32836463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 360
Target Start/End: Original strand, 835431 - 835487
Alignment:
Q  305 ctcacgaaaatggttctgcctcttttaaatggaacaaaaccgt-cctaaactatcat 360  Q
    ||||||||||||||  ||||||||| |||| ||||||||| || |||||||||||||    
T  835431 ctcacgaaaatggtcttgcctctttcaaatcgaacaaaactgtccctaaactatcat 835487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 343
Target Start/End: Original strand, 46279 - 46341
Alignment:
Q  281 ttttggtaatcgtattttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaa 343  Q
    |||||||  ||| ||||||| ||||| |||||||||||||| |||||||||||| ||||||||    
T  46279 ttttggtcctcgcattttgaccaacttacgaaaatggttctacctcttttaaatcgaacaaaa 46341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 6418 - 6474
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||||||||||| ||||||||| ||  || |||||||| |||||||| ||||||    
T  6418 attttgatcaactcatgaaaatggtactatcttttttaaatcgaacaaaatcgtcct 6474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 6436 - 6492
Alignment:
Q  294 attttgatcaactcacgaaaatggttctgcctcttttaaatggaacaaaaccgtcct 350  Q
    ||||||||||||||| ||||||||| ||  || |||||||| |||||||| ||||||    
T  6436 attttgatcaactcatgaaaatggtactatcttttttaaatcgaacaaaatcgtcct 6492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University