View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_6 (Length: 688)
Name: NF1271_low_6
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 176 - 681
Target Start/End: Original strand, 32260998 - 32261503
Alignment:
| Q |
176 |
ggaataaatgttagtatgttaattgtttgtatattagtattcnnnnnnngcaagacttgaaccctgaacctttaactcttaaactctttttaatccttta |
275 |
Q |
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| T |
32260998 |
ggaataaatgttagtatgttaattgtttgtatattagtattctttttttgcaagacttgaaccctgaacctttaactcttaaactctttttaatccttta |
32261097 |
T |
|
| Q |
276 |
gctatcaattgagttatccaaccccaaactatgtatatgttgtctttaattttacctttgaccctatttgtattttatagttttacacaacaaactaaca |
375 |
Q |
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| T |
32261098 |
gctatcaattgagttatccaaccccaaactatgtatatgttgtctttaattttacctttgatcctatttgtattttatagttttacacaacaaactaaca |
32261197 |
T |
|
| Q |
376 |
aattaactttatgtttgtagctaatggatgatgaaacattgagtcacttgatgataggtgtggtggttacaactgcaatcatcatacccctcattaaatt |
475 |
Q |
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| T |
32261198 |
aattaactttatgtttgtagctaatggatgatgaaacattgagtcacttgatgataggtgtggtggttacaactgcaatcatcacacccctcattaaatt |
32261297 |
T |
|
| Q |
476 |
gttatacaagcatcgtcctcgagtcttaagttcatcaagcatatttgatgaagaaatgagaacaatccaaaacactccaagaaattcagagtttcgcatt |
575 |
Q |
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| T |
32261298 |
gttatacaagcatcgtcctcgagtattaagttcatcaagcatatttgatgaagaaatgagaacaatccaaaacactccaagaaattcagagtttcgcatt |
32261397 |
T |
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| Q |
576 |
gttacttgtttacatagtgaaggaaacgttcgtggcatgactgccctagtggaaatttgcaacccaattcaagaaagtcccttatgtgtctttgtgattc |
675 |
Q |
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| T |
32261398 |
gttacttgtttacatagtgaaggaaacgttcgtggcatgactgccctagtggaaatttgcaacccaattcaagaaagtcccttatgtgtctttgtgattc |
32261497 |
T |
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| Q |
676 |
atctca |
681 |
Q |
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| T |
32261498 |
atctca |
32261503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 29 - 174
Target Start/End: Original strand, 32260808 - 32260953
Alignment:
| Q |
29 |
agcccaaacatggcacagtgcttggcctcatgttgaacatcaagggcatacctcaccttataacctttattaaattgcaccaaatcaaggtacgcaatag |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32260808 |
agcccaaacatggcacagtgcttggcctcatgttgaacatcaagggcatacctcaccttataacctttattaaattgcaccaaatcaaggtacgcaatag |
32260907 |
T |
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| Q |
129 |
tttaaatacttaattaatcttatatatcacatattggatccatcgt |
174 |
Q |
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| T |
32260908 |
tttaaatacttaattaatcttatatatcacatattgaatccatcgt |
32260953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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