View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_60 (Length: 437)

Name: NF1271_low_60
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_60
NF1271_low_60
[»] chr4 (1 HSPs)
chr4 (123-426)||(49862076-49862370)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 123 - 426
Target Start/End: Complemental strand, 49862370 - 49862076
Alignment:
Q  123 gtcatcaatcaactcactgagtctcctccctttcacctcattctgcatctgcggcacaatccaacgacggagaaatgcttggtttcctctctctgctaag 222  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||         ||||||||||||||||||||||||||||||||||||||||||||    
T  49862370 gtcatcaatcaactcaccgagtctcctccctttcacctcgttctgca---------caatccaacgacggagaaatgcttggtttcctctctctgctaag 49862280  T
Q  223 gattctcgtgaacgacaaaacacgactcattggtgaccgaaacgatgatggtgaatcacaactcgactctcccacagcaaaactcttgcaatcggattca 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49862279 gattctcgtgaacgacaaaacacgactcattggtgaccgaaacgatgatggtgaatcacaactcgactctcccacagcaaaactcttgcaatcggattca 49862180  T
Q  323 ctccttctcggaatctcaacggtaatgtcaaccaatgaagattgcttctcatcagaacatgaggaagaacaagaagaagaaaattccgatacagactggt 422  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  49862179 ctccttctcggaatctcaacggtaatgtcaaccgatgaagattgcttctcatcagaacatgaggaagaacaagaagaagaaaattccgatacagaccggt 49862080  T

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