View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_64 (Length: 430)

Name: NF1271_low_64
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_64
NF1271_low_64
[»] chr6 (13 HSPs)
chr6 (11-418)||(1442091-1442498)
chr6 (154-378)||(7564886-7565107)
chr6 (16-143)||(176270-176397)
chr6 (30-143)||(1470925-1471038)
chr6 (154-221)||(370920-370987)
chr6 (154-225)||(1459676-1459747)
chr6 (16-73)||(7564739-7564796)
chr6 (25-73)||(370782-370830)
chr6 (154-225)||(1471058-1471129)
chr6 (30-143)||(1459543-1459656)
chr6 (312-377)||(176000-176065)
chr6 (30-83)||(1453842-1453895)
chr6 (30-83)||(1465534-1465587)
[»] chr4 (4 HSPs)
chr4 (245-378)||(55419477-55419610)
chr4 (30-141)||(55419720-55419831)
chr4 (23-73)||(20019767-20019817)
chr4 (23-67)||(20016180-20016224)
[»] chr7 (3 HSPs)
chr7 (245-369)||(3926763-3926887)
chr7 (30-73)||(3927065-3927108)
chr7 (169-221)||(3926908-3926960)
[»] chr3 (12 HSPs)
chr3 (23-69)||(2442049-2442095)
chr3 (28-73)||(9608344-9608389)
chr3 (30-73)||(2456255-2456298)
chr3 (30-73)||(3754606-3754649)
chr3 (18-69)||(4142124-4142175)
chr3 (23-73)||(968677-968727)
chr3 (23-69)||(4157939-4157985)
chr3 (24-73)||(997582-997631)
chr3 (24-73)||(1013972-1014021)
chr3 (28-69)||(13498234-13498275)
chr3 (32-69)||(44001605-44001642)
chr3 (21-73)||(803211-803263)
[»] chr5 (5 HSPs)
chr5 (28-69)||(20293005-20293046)
chr5 (28-69)||(20305866-20305907)
chr5 (28-69)||(20310270-20310311)
chr5 (30-73)||(11081819-11081862)
chr5 (28-69)||(20301453-20301494)
[»] chr2 (2 HSPs)
chr2 (20-69)||(6538844-6538893)
chr2 (20-79)||(20538018-20538077)
[»] scaffold0044 (1 HSPs)
scaffold0044 (30-73)||(89149-89192)


Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 11 - 418
Target Start/End: Original strand, 1442091 - 1442498
Alignment:
Q  11 cagagatggaacagtgaataatttagtccaagaatctttaattccataatccttcataacccatgtatccaaaatagctccgttttgagcaaggatgcat 110  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1442091 cagagatggaacagtgaacaatttagtccaagaatctttaattccataatccttcataacccatgtatccaaaatagttccgttttgagcaaggatgcat 1442190  T
Q  111 aagcaatcattggaaacccccaagctcaagttaaatgggggagcataatcaggcagcaaaatctcttgataagactctttttctaaatcaagagagagaa 210  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1442191 aagcaatcattggaaacccccaagctcaagttaaatggaggagcataatcaggcaacaaaatctcttgataagactctttttctaaatcaagagagagaa 1442290  T
Q  211 taatccatgaagagtgttttctttgatctcgccgtatggcccaattaatggtgccacttaaaaatatcccatgacaccaatcggctacatccatgatttc 310  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1442291 taatccatgaagagtgttttctttgatctcaccgtatggcccaattaatggtgccacttaaaaatatcccatgacaccaatcggctacatccatgatttc 1442390  T
Q  311 agaagggaagtctgggatccttttccaaaaattagtacctaaagtatgaaccctaacttcagttttgctaaaacagttggttatatcagatcgatagcat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1442391 agaagggaagtctgggatccttttccaaaaattagtacctaaagtatgaaccctaacttcagttttgctaaaacagttggttatatcagatcgatagaat 1442490  T
Q  411 gcaacagc 418  Q
    | ||||||    
T  1442491 gtaacagc 1442498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 378
Target Start/End: Original strand, 7564886 - 7565107
Alignment:
Q  154 cataatcaggcagcaaaatctcttgataagactctttttctaaatcaagagagagaataatccatgaagagtgttttctttgatctcgccgtatggccca 253  Q
    ||||||| ||| |||||||||||||||||||||| ||  |||||||||| || ||||| | |||||||||||  ||   |||||||     |||| ||||    
T  7564886 cataatctggctgcaaaatctcttgataagactcgttacctaaatcaagggaaagaatgacccatgaagagtcattatcttgatcttt---tatgaccca 7564982  T
Q  254 attaatggtgccacttaaaaatatcccatgacaccaatcggctacatccatgatttcagaagggaagtctgggatccttttccaaaaattagtacctaaa 353  Q
    || ||||| |||||||| |||| |||||  ||  |  || | |||| || || ||||||||||||||||||| |||||| |||||| |||  ||||||||    
T  7564983 atgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaagtctggaatccttctccaaacattgctacctaaa 7565082  T
Q  354 gtatgaaccctaacttcagttttgc 378  Q
    ||||||||| |||||| ||||||||    
T  7565083 gtatgaaccttaacttgagttttgc 7565107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 176397 - 176270
Alignment:
Q  16 atggaacagtgaataatttagtccaagaatctttaattccataatccttcataacccatgtatccaaaatagctccgttttgagcaaggatgcataagca 115  Q
    |||||| |||||| ||||||||||||||||||||| |||||||||| ||||||  |||  ||||||||| || | || | |||||||||| ||||| |||    
T  176397 atggaagagtgaacaatttagtccaagaatctttatttccataatcattcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgcataggca 176298  T
Q  116 atcattggaaacccccaagctcaagtta 143  Q
    |||  | |||||||||||||| ||||||    
T  176297 atccctagaaacccccaagctgaagtta 176270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 1470925 - 1471038
Alignment:
Q  30 aatttagtccaagaatctttaattccataatccttcataacccatgtatccaaaatagctccgttttgagcaaggatgcataagcaatcattggaaaccc 129  Q
    ||||||| ||||||||||||| |||||||||| |||||||||||  ||||||||| || |  | | |||||||||||||||||| ||||  | |||||||    
T  1470925 aatttagaccaagaatctttatttccataatctttcataacccaaatatccaaaaaagatttggtatgagcaaggatgcataagtaatccctagaaaccc 1471024  T
Q  130 ccaagctcaagtta 143  Q
    ||||||| ||||||    
T  1471025 ccaagctaaagtta 1471038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 370920 - 370987
Alignment:
Q  154 cataatcaggcagcaaaatctcttgataagactctttttctaaatcaagagagagaataatccatgaa 221  Q
    ||||||||||| || |||||||||||||| |||||||||||||||||||||| ||||| | |||||||    
T  370920 cataatcaggctgcgaaatctcttgataatactctttttctaaatcaagagaaagaatgacccatgaa 370987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 1459676 - 1459747
Alignment:
Q  154 cataatcaggcagcaaaatctcttgataagactctttttctaaatcaagagagagaataatccatgaagagt 225  Q
    |||||| |||| |||||||||||||||||||||| ||| ||||||||||||| ||||| | || ||||||||    
T  1459676 cataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaagaatgacccgtgaagagt 1459747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 7564739 - 7564796
Alignment:
Q  16 atggaacagtgaataatttagtccaagaatctttaattccataatccttcataaccca 73  Q
    |||||||| |||| ||||||||||||||||| ||  ||||||||||||||||||||||    
T  7564739 atggaacactgaacaatttagtccaagaatccttgtttccataatccttcataaccca 7564796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 370782 - 370830
Alignment:
Q  25 tgaataatttagtccaagaatctttaattccataatccttcataaccca 73  Q
    |||| ||||||||||||||||||||| ||||||||| ||||||||||||    
T  370782 tgaacaatttagtccaagaatctttatttccataattcttcataaccca 370830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 1471058 - 1471129
Alignment:
Q  154 cataatcaggcagcaaaatctcttgataagactctttttctaaatcaagagagagaataatccatgaagagt 225  Q
    ||||||||||| | |||||||||||||||||||| ||| |||||| |||||| ||||| | || ||||||||    
T  1471058 cataatcaggctgtaaaatctcttgataagactcgtttcctaaattaagagaaagaatgacccgtgaagagt 1471129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 1459543 - 1459656
Alignment:
Q  30 aatttagtccaagaatctttaattccataatccttcataacccatgtatccaaaatagctccgttttgagcaaggatgcataagcaatcattggaaaccc 129  Q
    |||||||||||||| |||||| ||||| |||| |||||||||||  ||||||||| || |    | |||||||||| ||||||| ||||  |  ||||||    
T  1459543 aatttagtccaagattctttatttccaaaatctttcataacccaaatatccaaaaaagattttgtatgagcaaggacgcataagtaatccctataaaccc 1459642  T
Q  130 ccaagctcaagtta 143  Q
    ||||||| ||||||    
T  1459643 ccaagctaaagtta 1459656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 176065 - 176000
Alignment:
Q  312 gaagggaagtctgggatccttttccaaaaattagtacctaaagtatgaaccctaacttcagttttg 377  Q
    |||||||||||||| |||||| ||||| | || || |||||||| |||||| |||||| |||||||    
T  176065 gaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgaaccttaacttgagttttg 176000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 1453842 - 1453895
Alignment:
Q  30 aatttagtccaagaatctttaattccataatccttcataacccatgtatccaaa 83  Q
    |||||| ||||||| |||||| ||||||||| ||||||||||||  ||||||||    
T  1453842 aatttattccaagagtctttatttccataatacttcataacccagatatccaaa 1453895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 1465534 - 1465587
Alignment:
Q  30 aatttagtccaagaatctttaattccataatccttcataacccatgtatccaaa 83  Q
    |||||| ||||||| |||||| ||||||||| ||||||||||||  ||||||||    
T  1465534 aatttattccaagagtctttatttccataatacttcataacccagatatccaaa 1465587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 245 - 378
Target Start/End: Complemental strand, 55419610 - 55419477
Alignment:
Q  245 tatggcccaattaatggtgccacttaaaaatatcccatgacaccaatcggctacatccatgatttcagaagggaagtctgggatccttttccaaaaatta 344  Q
    |||||||||||||||||||||||||| |||| ||||  |||||   ||||  | | || |||||||||||||||||||||| |||||||||||||| ||     
T  55419610 tatggcccaattaatggtgccacttacaaatttccccggacactcttcgggcaaacccgtgatttcagaagggaagtctggtatccttttccaaaagttg 55419511  T
Q  345 gtacctaaagtatgaaccctaacttcagttttgc 378  Q
    ||||||||||||||| ||||||||| ||||||||    
T  55419510 gtacctaaagtatgagccctaacttgagttttgc 55419477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 55419831 - 55419720
Alignment:
Q  30 aatttagtccaagaatctttaattccataatccttcataacccatgtatccaaaatagctccgttttgagcaaggatgcataagcaatcattggaaaccc 129  Q
    ||||||||||||||||||||| |||||||| ||||||||| |||  ||||||||| ||    | | ||||||| || |||||||||||| |||||||| |    
T  55419831 aatttagtccaagaatctttatttccataaaccttcataagccagatatccaaaaaagaattggtgtgagcaacgacgcataagcaatccttggaaacac 55419732  T
Q  130 ccaagctcaagt 141  Q
     |||| ||||||    
T  55419731 tcaagttcaagt 55419720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 20019767 - 20019817
Alignment:
Q  23 agtgaataatttagtccaagaatctttaattccataatccttcataaccca 73  Q
    |||||| |||||||||||||| |||| ||||||||| |||||||| |||||    
T  20019767 agtgaacaatttagtccaagactcttgaattccatattccttcatgaccca 20019817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 20016180 - 20016224
Alignment:
Q  23 agtgaataatttagtccaagaatctttaattccataatccttcat 67  Q
    |||||| |||||||||||||| |||| ||||||||| ||||||||    
T  20016180 agtgaacaatttagtccaagactcttgaattccatattccttcat 20016224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 369
Target Start/End: Complemental strand, 3926887 - 3926763
Alignment:
Q  245 tatggcccaattaatggtgccacttaaaaatatcccatgacaccaatcggctacatccatgatttcagaagggaagtctgggatccttttccaaaaatta 344  Q
    ||||||||||||||| |||||||||| |||| |||||  | ||| || || || | ||||||| |  |||||||||| ||| |||||  ||||||||||     
T  3926887 tatggcccaattaattgtgccacttacaaatttcccaacatacccattgggtaaacccatgatatttgaagggaagtttggaatcctcctccaaaaattg 3926788  T
Q  345 gtacctaaagtatgaaccctaactt 369  Q
    ||||||| |||||||||||||||||    
T  3926787 gtacctagagtatgaaccctaactt 3926763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 3927108 - 3927065
Alignment:
Q  30 aatttagtccaagaatctttaattccataatccttcataaccca 73  Q
    |||||||||||||||| |||| ||||||||||||||||||||||    
T  3927108 aatttagtccaagaatttttatttccataatccttcataaccca 3927065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 3926960 - 3926908
Alignment:
Q  169 aaatctcttgataagactctttttctaaatcaagagagagaataatccatgaa 221  Q
    ||||||||||||| ||||| ||| ||||||||||||| ||||| | |||||||    
T  3926960 aaatctcttgataggactcgtttcctaaatcaagagaaagaatgacccatgaa 3926908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 2442095 - 2442049
Alignment:
Q  23 agtgaataatttagtccaagaatctttaattccataatccttcataa 69  Q
    |||||| ||||||||||||||||||||| ||||||| ||||||||||    
T  2442095 agtgaacaatttagtccaagaatctttatttccatactccttcataa 2442049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 9608344 - 9608389
Alignment:
Q  28 ataatttagtccaagaatctttaattccataatccttcataaccca 73  Q
    |||||||||||||||||||| || ||||||| ||||||||||||||    
T  9608344 ataatttagtccaagaatctatatttccatattccttcataaccca 9608389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 2456298 - 2456255
Alignment:
Q  30 aatttagtccaagaatctttaattccataatccttcataaccca 73  Q
    |||||||||||||| |||||| ||||||| ||||||||||||||    
T  2456298 aatttagtccaagagtctttatttccatattccttcataaccca 2456255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 3754649 - 3754606
Alignment:
Q  30 aatttagtccaagaatctttaattccataatccttcataaccca 73  Q
    |||||||||||||| |||||| ||||||| ||||||||||||||    
T  3754649 aatttagtccaagactctttatttccatattccttcataaccca 3754606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 4142124 - 4142175
Alignment:
Q  18 ggaacagtgaataatttagtccaagaatctttaattccataatccttcataa 69  Q
    |||| |||||| |||||||||||||| |||||| ||||||| ||||||||||    
T  4142124 ggaatagtgaacaatttagtccaagactctttatttccatattccttcataa 4142175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 968727 - 968677
Alignment:
Q  23 agtgaataatttagtccaagaatctttaattccataatccttcataaccca 73  Q
    |||||||||||||||||| || |||||| ||||||  ||||||||||||||    
T  968727 agtgaataatttagtccatgactctttatttccatgttccttcataaccca 968677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 4157939 - 4157985
Alignment:
Q  23 agtgaataatttagtccaagaatctttaattccataatccttcataa 69  Q
    |||||| |||||||||||||| |||||| ||||||| ||||||||||    
T  4157939 agtgaacaatttagtccaagactctttatttccatattccttcataa 4157985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 997631 - 997582
Alignment:
Q  24 gtgaataatttagtccaagaatctttaattccataatccttcataaccca 73  Q
    ||||||| |||||||||||| |||||| ||||||| |||||||| |||||    
T  997631 gtgaatagtttagtccaagactctttatttccatattccttcattaccca 997582  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 1014021 - 1013972
Alignment:
Q  24 gtgaataatttagtccaagaatctttaattccataatccttcataaccca 73  Q
    ||||||| |||||||||||| |||||| ||||||| |||||||| |||||    
T  1014021 gtgaatagtttagtccaagactctttatttccatattccttcattaccca 1013972  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 13498275 - 13498234
Alignment:
Q  28 ataatttagtccaagaatctttaattccataatccttcataa 69  Q
    |||||||||||||||| |||||| ||||||| ||||||||||    
T  13498275 ataatttagtccaagactctttatttccatattccttcataa 13498234  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 44001642 - 44001605
Alignment:
Q  32 tttagtccaagaatctttaattccataatccttcataa 69  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  44001642 tttagtccaagactctttaattccatattccttcataa 44001605  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 803211 - 803263
Alignment:
Q  21 acagtgaataatttagtccaagaatctttaattccataatccttcataaccca 73  Q
    |||||||| || ||||||||||| |||||| ||||||| || |||||||||||    
T  803211 acagtgaacaacttagtccaagactctttatttccatattctttcataaccca 803263  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 20293046 - 20293005
Alignment:
Q  28 ataatttagtccaagaatctttaattccataatccttcataa 69  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  20293046 ataatttagtccaagactctttaattccatattccttcataa 20293005  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 20305907 - 20305866
Alignment:
Q  28 ataatttagtccaagaatctttaattccataatccttcataa 69  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  20305907 ataatttagtccaagactctttaattccatattccttcataa 20305866  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 20310311 - 20310270
Alignment:
Q  28 ataatttagtccaagaatctttaattccataatccttcataa 69  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  20310311 ataatttagtccaagactctttaattccatattccttcataa 20310270  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 11081862 - 11081819
Alignment:
Q  30 aatttagtccaagaatctttaattccataatccttcataaccca 73  Q
    |||||||||||||| |||||| ||||||| ||||||||||||||    
T  11081862 aatttagtccaagactctttatttccatactccttcataaccca 11081819  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 20301494 - 20301453
Alignment:
Q  28 ataatttagtccaagaatctttaattccataatccttcataa 69  Q
    |||||||||||||||| ||||||||| |||| ||||||||||    
T  20301494 ataatttagtccaagactctttaattgcatattccttcataa 20301453  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 6538893 - 6538844
Alignment:
Q  20 aacagtgaataatttagtccaagaatctttaattccataatccttcataa 69  Q
    |||| |||| ||||||||||||||||||||| ||||||| ||||||||||    
T  6538893 aacactgaacaatttagtccaagaatctttatttccatactccttcataa 6538844  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 20538077 - 20538018
Alignment:
Q  20 aacagtgaataatttagtccaagaatctttaattccataatccttcataacccatgtatc 79  Q
    ||||||||| |||||||||||||| |||| ||||||||| || ||||| |||||| ||||    
T  20538077 aacagtgaacaatttagtccaagattcttaaattccatattcattcatgacccatatatc 20538018  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 89192 - 89149
Alignment:
Q  30 aatttagtccaagaatctttaattccataatccttcataaccca 73  Q
    |||||||||||||| |||||| ||||||| ||||||||||||||    
T  89192 aatttagtccaagactctttatttccatattccttcataaccca 89149  T

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