View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_65 (Length: 427)
Name: NF1271_low_65
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_65 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 30 - 312
Target Start/End: Complemental strand, 5697991 - 5697709
Alignment:
| Q |
30 |
gctaatgtaatgattgtgggaatgaaataaccaaacatgttaaaagtaactatataatatgggaatgatttatttcccaacaatatcaaggattaaggtt |
129 |
Q |
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| T |
5697991 |
gctagtgtaatgattgtgggaatgaaataaccaaacatgttaaaagtaactatataatatgggaatgatttatttcccaacaatatcaaggattaaggtt |
5697892 |
T |
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| Q |
130 |
gtgcttctaaatataaaacatggtacaattttgtccaatataaatcaaaaccactcatttccaattatcatctttcattattgacatggatgcatagtaa |
229 |
Q |
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| T |
5697891 |
gtgcttctaaatataaaacatggtacaattttgtccaatataaatccaaaccactcatttccaattatcatctttcattattcacatggatgcatagtaa |
5697792 |
T |
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| Q |
230 |
cactatcattgtacaacataaatttaccactctttaataaaacatttggattatggttctaaattcttacatttccacacatt |
312 |
Q |
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| T |
5697791 |
cactatcattgtacaacataaatttaccactctttaataaaacatttggattatggttctaaattcttacatttccacacatt |
5697709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 140 - 406
Target Start/End: Complemental strand, 5686099 - 5685834
Alignment:
| Q |
140 |
atataaaacatggtacaattttgtccaatataaatcaaaaccactcatttccaattatcatctttcattattgacatggatgcatagtaacactatcatt |
239 |
Q |
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| T |
5686099 |
atataaaatatggtacaattttgtccaatataaatcaaaaccactcatttccaattatcatctttcattattcacatggatgcatagtagcactatcatt |
5686000 |
T |
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| Q |
240 |
gtacaacataaatttaccactctttaataaaacatttggattatggttctaaattcttacatttccacacatttctgcatttggtctttctcattaactt |
339 |
Q |
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| T |
5685999 |
gtacaacataa-tataccactctttaataaaacatttggattatggttctaaattcttacatttccacacatttctgcatttggtctttctcattaactt |
5685901 |
T |
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| Q |
340 |
ggcccagacatatagtcttcgctcttcagcaacttttgttcaagtattgaaataatattcatctcac |
406 |
Q |
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| T |
5685900 |
ggcccagacatatagtcttcactcttcagcaacttttgttcaagtattgaaataatattcatatcac |
5685834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 5686217 - 5686132
Alignment:
| Q |
42 |
attgtgggaatgaaataaccaaacatgttaaaagtaactatataatatgggaatgatttatttcccaacaatatcaaggattaaggttg |
130 |
Q |
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| T |
5686217 |
attgtgggaatgaaaggaccaaacatgttaaaagtaactatata---tgggtatgatttatttcccaacaatataaaggattaaggttg |
5686132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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