View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1271_low_67 (Length: 423)
Name: NF1271_low_67
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_67 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 29 - 412
Target Start/End: Complemental strand, 50593988 - 50593604
Alignment:
| Q |
29 |
aaatatggaactaaaagtgaagtgtgtagtatgaaaccaacaagatcatcaa-gtcattggtagttactaaatgcatggtgaccacattcatgagctatc |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50593988 |
aaatatggaactaaaagtgaagtgtgtagtatgaaaccaacaagatcatcaaagccattggtagttactaaatgcatggtgaccacattcatgagctatc |
50593889 |
T |
|
| Q |
128 |
acccaaacaccggtgagaatgcaaccttggagaagccaatagacaggccaaaggatgaagggaaaagggtgagggaatgagtggaaataagtagtcgaaa |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50593888 |
acccaaacaccggtgagaatgcaaccttggagaagccaatagacaggccaaaggatgaagggaaaagggtgagggaatgagtggaaataagtagtcgaaa |
50593789 |
T |
|
| Q |
228 |
tgtagagaacagaggctattgaaaggtcaaaaactacgtaggagaatgataagaggatggaacgttcaaagcaatgcggtggaatggatttcttcaactg |
327 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50593788 |
tgtagagaacatatgctattgaaaggtcaaaaactacgtaggagaatgataagaggatggaacgttcaaagcaatgtggtggaatggatttcttcaactg |
50593689 |
T |
|
| Q |
328 |
accaactgtgaatggtggctttgtgtgtggaacccttgagtgacgattgagtttagaggcagtgacatggcctccagctcccttt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
50593688 |
accaactgtgaatggtggctttgtgtgtggaacccttgagtgacgattgagtttagaggcagtgacatggccgccagctcccttt |
50593604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 134 - 385
Target Start/End: Complemental strand, 1897023 - 1896773
Alignment:
| Q |
134 |
acaccggtgagaatgcaaccttggagaagccaatagacaggccaaaggatgaagggaaaagggtgagggaatgagtggaaataagtagtcgaaatgtaga |
233 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||| | |||| ||||||||||||||||| || |||||| |||||||| || ||||| ||||||||| |
|
|
| T |
1897023 |
acaccagtgagaatgcaaccttggagaagttaataaataggctaaaggatgaagggaaaaaggcgagggatggagtggaagtatgtagtgcaaatgtaga |
1896924 |
T |
|
| Q |
234 |
gaacagaggctattgaaaggtcaaaaactacgtaggagaatgataagaggatggaacgttcaaagcaatgcggtggaatggatttcttcaactgaccaac |
333 |
Q |
| |
|
||| || ||||| ||| || ||||| || ||| ||||| | || || || |||| || ||| ||| ||||||||||||||||||||| | ||||| |
|
|
| T |
1896923 |
gaaagaagcctattcaaaagtaaaaaataacatagaagaattagaatagaatagaacattaaaaa-aatatggtggaatggatttcttcaaccggccaac |
1896825 |
T |
|
| Q |
334 |
tgtgaatggtggctttgtgtgtggaacccttgagtgacgattgagtttagag |
385 |
Q |
| |
|
||||||| |||||||| || |||||||||||||| || |||||||||||||| |
|
|
| T |
1896824 |
tgtgaattgtggctttatgcgtggaacccttgagagatgattgagtttagag |
1896773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 23031155 - 23031080
Alignment:
| Q |
83 |
cattggtagttactaaatgcatggtgaccacattcatgagctatcacccaaacaccggtgagaatgcaaccttgga |
158 |
Q |
| |
|
||||| || |||||||||||||| || ||||||||||| || || |||||||| ||||| |||||||| ||||||| |
|
|
| T |
23031155 |
cattgataattactaaatgcatgatggccacattcatgtgcaatgacccaaactccggttagaatgcatccttgga |
23031080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 37019998 - 37019913
Alignment:
| Q |
73 |
atcatcaagtcattggtagttactaaatgcatggtgaccacattcatgagctatcacccaaacaccggtgagaatgcaaccttgga |
158 |
Q |
| |
|
||||||||| ||||| |||| ||| ||||||||||| ||||| ||||| || || |||||||||||||| || ||||||||||||| |
|
|
| T |
37019998 |
atcatcaagccattgatagtcactgaatgcatggtggccacactcatgtgcaatgacccaaacaccggtaaggatgcaaccttgga |
37019913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University