View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_68 (Length: 423)

Name: NF1271_low_68
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_68
NF1271_low_68
[»] chr6 (8 HSPs)
chr6 (30-360)||(22204731-22205058)
chr6 (30-360)||(20086105-20086435)
chr6 (30-397)||(24384904-24385270)
chr6 (30-370)||(20238018-20238358)
chr6 (30-370)||(22132002-22132342)
chr6 (35-341)||(20205430-20205736)
chr6 (35-341)||(22099453-22099759)
chr6 (33-360)||(21971992-21972316)
[»] scaffold0264 (1 HSPs)
scaffold0264 (30-370)||(16054-16394)
[»] scaffold0007 (1 HSPs)
scaffold0007 (30-235)||(5203-5411)
[»] scaffold0074 (1 HSPs)
scaffold0074 (30-370)||(47547-47884)
[»] chr5 (1 HSPs)
chr5 (67-141)||(9674592-9674666)
[»] chr1 (1 HSPs)
chr1 (67-141)||(47635209-47635283)


Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 30 - 360
Target Start/End: Complemental strand, 22205058 - 22204731
Alignment:
30 gaacaagctcatttggtgaaggagcattaatagacctataaaaaggatatagttcatacctaatattacagctaggaaaaagaactctcccacccacctt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
22205058 gaacaagctcatttggtgaaggagcattaatagacctataaaaaggatatagttcatacctaatattacagctaggaaaaacaactctcgcacccacctt 22204959  T
130 tccatcacaacagctaggaagtacctcaatagcactattgagacaggttctgcaatcattaggggacaaatccggcgtgcactgagctaggcagtaaagg 229  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||   || ||||| ||||||||||||||||||||||||||||||    
22204958 tccatcacaacagctaggaagttcctcaatagcactattaagacaggttctgcaatcaccgggtgacaagtccggcgtgcactgagctaggcagtaaagg 22204859  T
230 gtctgagattcagaaatctttgcttcttttgtggcaaatttcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcg 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||| |||||||||||||||||||||||||||||||||    
22204858 gtctgagattcagaaatctttgcttcttttgtggcaaatttcttg---ttgtcagcagtaagtggacctgctgcttcctctgcagttttattcatcgtcg 22204762  T
330 aaaacaataaaggcatgaagctttttgtgtt 360  Q
    |||||||||||||||||||||||| ||||||    
22204761 aaaacaataaaggcatgaagctttctgtgtt 22204731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 30 - 360
Target Start/End: Original strand, 20086105 - 20086435
Alignment:
30 gaacaagctcatttggtgaaggagcattaatagacctataaaaaggatatagttcatacctaatattacagctaggaaaaagaactctcccacccacctt 129  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
20086105 gaacaagctcatttggcgaaggagcattaatagacctataaaaaggatataattcatacctaacattacagctaggaaaaagaactctcccacccacctt 20086204  T
130 tccatcacaacagctaggaagtacctcaatagcactattgagacaggttctgcaatcattaggggacaaatccggcgtgcactgagctaggcagtaaagg 229  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||   || ||||| |||||||||||||||||||| |||||||||    
20086205 tccatcacaacagctaggaagtttctcaatagcactattgagacaggttctgcaatcaccgggtgacaagtccggcgtgcactgagctagacagtaaagg 20086304  T
230 gtctgagattcagaaatctttgcttcttttgtggcaaatttcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcg 329  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||    
20086305 gtctgagattcagaaatccttgcttcttttgtggcaaacttcttgttgttgtcagtagtaagtggacctgctgcttcctctgcagttttatccatcgtcg 20086404  T
330 aaaacaataaaggcatgaagctttttgtgtt 360  Q
    |||||||||||||||||||||||| ||||||    
20086405 aaaacaataaaggcatgaagctttctgtgtt 20086435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 30 - 397
Target Start/End: Complemental strand, 24385270 - 24384904
Alignment:
30 gaacaagctcatttggtgaaggagcattaatagacctataaaaaggatatagttcatacctaatattacagctaggaaaaagaactctcccacccacctt 129  Q
    ||||||||||||||| |||||||||| |||||||  ||||||||||| |||||||||||||||| ||||||||||||||| ||||||||| ||||  |||    
24385270 gaacaagctcatttgatgaaggagcaataatagatttataaaaaggaaatagttcatacctaatgttacagctaggaaaaggaactctcc-accctgctt 24385172  T
130 tccatcacaacagctaggaagtacctcaatagcactattgagacaggttctgcaatcattaggggacaaatccggcgtgcactgagctaggcagtaaagg 229  Q
    ||||||||||||    |||||    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||   |||||||     
24385171 tccatcacaacatagtggaagagattcaatagcactattgagacaggttctgcaatcattaggggacaagtctggcgtgcactgagctaaatagtaaagc 24385072  T
230 gtctgagattcagaaatctttgcttcttttgtggcaaatttcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcg 329  Q
    |||| | | |  ||||    ||| ||  |||||| ||| ||||||||||||  ||||||||||||| || ||||||||||||||||| ||||||| ||||    
24385071 gtctaaaaatttgaaacagatgcatcacttgtggaaaacttcttgttgttgcaagcagtaagtggacctactgcttcctctgcagttatattcattgtcg 24384972  T
330 aaaacaataaaggcatgaagctttttgtgttagatacgttgcctacgttccacatgtaaagccaagga 397  Q
    |||| ||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||    
24384971 aaaataataaagccatgaagctttttgtgttagatatgttgcctgcgttccacatgtaaagcccagga 24384904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 30 - 370
Target Start/End: Original strand, 20238018 - 20238358
Alignment:
30 gaacaagctcatttggtgaaggagcattaatagacctataaaaaggatatagttcatacctaatattacagctaggaaaaagaactctcccacccacctt 129  Q
    |||||||||||||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||| | | |  ||||||||||  |||    
20238018 gaacaagctcatttagtgaaggagcattagtagatctataaaaaggatatagctcatacctaatattacaactaggatataaatttctcccaccctgctt 20238117  T
130 tccatcaca-acagctaggaagtacctcaatagcactattgagacaggttctgcaatcattaggggacaaatccggcgtgcactgagctaggcagtaaag 228  Q
    ||||||| | |||  | | ||||  |  |||||||| |  ||| |||||||||||||||||    ||||| || ||||||||||||||||| ||||||||    
20238118 tccatcatacacattt-gaaagtttcctaatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgcactgagctagacagtaaag 20238216  T
229 ggtctgagattcagaaatctttgcttcttttgtggcaaatttcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtc 328  Q
     || |||||||||||||||| |  |||| | |||||||| ||| |||  |||||| ||||||||||| | ||||||| ||||||||||||||||||||||    
20238217 cgtttgagattcagaaatctgtttttctatcgtggcaaacttcgtgtccttgtcaccagtaagtggacccgctgctttctctgcagttttattcatcgtc 20238316  T
329 gaaaacaataaaggcatgaagctttttgtgttagatacgttg 370  Q
    |||||||||| |||||||||||||||||||||||||||||||    
20238317 gaaaacaatataggcatgaagctttttgtgttagatacgttg 20238358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 30 - 370
Target Start/End: Original strand, 22132002 - 22132342
Alignment:
30 gaacaagctcatttggtgaaggagcattaatagacctataaaaaggatatagttcatacctaatattacagctaggaaaaagaactctcccacccacctt 129  Q
    |||||||||||||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||| | | |  ||||||||||  |||    
22132002 gaacaagctcatttagtgaaggagcattagtagatctataaaaaggatatagctcatacctaatattacaactaggatataaatttctcccaccctgctt 22132101  T
130 tccatcaca-acagctaggaagtacctcaatagcactattgagacaggttctgcaatcattaggggacaaatccggcgtgcactgagctaggcagtaaag 228  Q
    ||||||| | |||  | | ||||  |  |||||||| |  ||| |||||||||||||||||    ||||| || ||||||||||||||||| ||||||||    
22132102 tccatcatacacattt-gaaagtttcctaatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgcactgagctagacagtaaag 22132200  T
229 ggtctgagattcagaaatctttgcttcttttgtggcaaatttcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtc 328  Q
     || |||||||||||||||| |  |||| | |||||||| ||| |||  |||||| ||||||||||| | ||||||| ||||||||||||||||||||||    
22132201 cgtttgagattcagaaatctgtttttctatcgtggcaaacttcgtgtccttgtcaccagtaagtggacccgctgctttctctgcagttttattcatcgtc 22132300  T
329 gaaaacaataaaggcatgaagctttttgtgttagatacgttg 370  Q
    |||||||||| |||||||||||||||||||||||||||||||    
22132301 gaaaacaatataggcatgaagctttttgtgttagatacgttg 22132342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 35 - 341
Target Start/End: Original strand, 20205430 - 20205736
Alignment:
35 agctcatttggtgaaggagcattaatagacctataaaaaggatatagttcatacctaatattacagctaggaaaaagaactctcccacccacctttccat 134  Q
    ||||||||||||||| || || |||||||||||||||| ||||||| ||||||||| | ||||||||||||| |||||| |||||| |||||||||||||    
20205430 agctcatttggtgaaagaacagtaatagacctataaaatggatataattcataccttacattacagctaggataaagaaatctccctcccacctttccat 20205529  T
135 cacaacagctaggaagtacctcaatagcactattgagacaggttctgcaatcattaggggacaaatccggcgtgcactgagctaggcagtaaagggtctg 234  Q
    ||||||   | | || |  ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
20205530 cacaactctttgaaactttctcaatagcactactgagacaggttctgcaatcattaggcgacaaatccggcgtgcactgagctagacagtaaagggtctg 20205629  T
235 agattcagaaatctt-tgcttcttttgtggcaaatttcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcgaaaa 333  Q
    |  ||| | |||||| ||||||||| || ||||| |||| ||| |||||| || ||||||||  ||||||||| ||| |||||  |||||| || | |||    
20205630 attttccg-aatcttgtgcttctttggttgcaaacttctcgtttttgtcaccaataagtggacttgctgcttcatctacagttcgattcatggttgtaaa 20205728  T
334 caataaag 341  Q
    ||||||||    
20205729 caataaag 20205736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 35 - 341
Target Start/End: Original strand, 22099453 - 22099759
Alignment:
35 agctcatttggtgaaggagcattaatagacctataaaaaggatatagttcatacctaatattacagctaggaaaaagaactctcccacccacctttccat 134  Q
    ||||||||||||||| || || |||||||||||||||| ||||||| ||||||||| | ||||||||||||| |||||| |||||| |||||||||||||    
22099453 agctcatttggtgaaagaacagtaatagacctataaaatggatataattcataccttacattacagctaggataaagaaatctccctcccacctttccat 22099552  T
135 cacaacagctaggaagtacctcaatagcactattgagacaggttctgcaatcattaggggacaaatccggcgtgcactgagctaggcagtaaagggtctg 234  Q
    ||||||   | | || |  ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
22099553 cacaactctttgaaactttctcaatagcactactgagacaggttctgcaatcattaggcgacaaatccggcgtgcactgagctagacagtaaagggtctg 22099652  T
235 agattcagaaatctt-tgcttcttttgtggcaaatttcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcgaaaa 333  Q
    |  ||| | |||||| ||||||||| || ||||| |||| ||| |||||| || ||||||||  ||||||||| ||| |||||  |||||| || | |||    
22099653 attttccg-aatcttgtgcttctttggttgcaaacttctcgtttttgtcaccaataagtggacttgctgcttcatctacagttcgattcatggttgtaaa 22099751  T
334 caataaag 341  Q
    ||||||||    
22099752 caataaag 22099759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 33 - 360
Target Start/End: Original strand, 21971992 - 21972316
Alignment:
33 caagctcatttggtgaaggagcattaatagacctataaaaaggatatagttcatacctaatattacagctaggaaaaagaactctcccacccacctttcc 132  Q
    ||||||||||||| ||| || ||| | ||||||||||||| ||||||| ||||||||||| ||||||||||||| |||||| ||||||||| ||||||||    
21971992 caagctcatttggggaaagaacataagtagacctataaaatggatataattcatacctaacattacagctaggataaagaaatctcccaccaacctttcc 21972091  T
133 atcacaacagctaggaagtacctcaatagcactattgagacaggttctgcaatcattaggggacaaatccggcgtgcactgagctaggcagtaaagggtc 232  Q
    | |||| |     | ||||  ||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||    
21972092 aacacagctttgtgaaagtgtctcaatagcactagtgagacaggttctgcaatcattaggcgacaaatccagcgtgcactgagctagactgtaaagggtc 21972191  T
233 tgagattcagaaatctttgcttcttttgtggcaaatttcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcgaaa 332  Q
    |||  ||| ||||    |||||||||||| |||||   |||||| |||||| || |||| |||  ||||||||| |||||||||  |||||| || ||||    
21972192 tgattttccgaaactcgtgcttcttttgttgcaaa---cttgttcttgtcaccactaagcggacttgctgcttcgtctgcagttcgattcatggttgaaa 21972288  T
333 acaataaaggcatgaagctttttgtgtt 360  Q
    ||||||||| || ||||||||| |||||    
21972289 acaataaagacacgaagcttttcgtgtt 21972316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 141; Significance: 9e-74; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 30 - 370
Target Start/End: Original strand, 16054 - 16394
Alignment:
30 gaacaagctcatttggtgaaggagcattaatagacctataaaaaggatatagttcatacctaatattacagctaggaaaaagaactctcccacccacctt 129  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||    
16054 gaacaagctcatttggcgaaggagcattaatagacctataaaaaggatatagttcatacctaacattacagctaggcaaaagaaatctcccacccacctt 16153  T
130 tccatcacaacagctaggaagtacctcaatagcactattgagacaggttctgcaatcattaggggacaaatccggcgtgcactgagctaggcagtaaagg 229  Q
    ||||| || |||   |||||| |  ||||||||| ||| |||||||||||||||||  ||||| ||||| || ||||||||||||||||| ||||| |||    
16154 tccataaccacacagaggaagaagatcaatagcagtatagagacaggttctgcaattgttaggagacaagtctggcgtgcactgagctagacagtatagg 16253  T
230 gtctgagattcagaaatctttgcttcttttgtggcaaatttcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtcg 329  Q
    ||||||  ||  ||||    |||||||||||| ||||| ||||| ||  ||||  || ||||||||  ||||||||| ||||||||||  | |   || |    
16254 gtctgatttttcgaaactcgtgcttcttttgttgcaaacttcttttttatgtctccaataagtggacgtgctgcttcatctgcagtttcgtaccaggttg 16353  T
330 aaaacaataaaggcatgaagctttttgtgttagatacgttg 370  Q
    ||||||||||||||||||||||||| ||||| || ||||||    
16354 aaaacaataaaggcatgaagcttttcgtgtttgagacgttg 16394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 30 - 235
Target Start/End: Complemental strand, 5411 - 5203
Alignment:
30 gaacaagctcatttggtgaaggagcatta---atagacctataaaaaggatatagttcatacctaatattacagctaggaaaaagaactctcccacccac 126  Q
    ||||||||||||||||||||| || | ||   |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
5411 gaacaagctcatttggtgaagaagtagtattgatagacctataaaaaggatatagttcatacctaatattacagctaggaaaaacaactctcccaccctc 5312  T
127 ctttccatcacaacagctaggaagtacctcaatagcactattgagacaggttctgcaatcattaggggacaaatccggcgtgcactgagctaggcagtaa 226  Q
    |||||||||||||    |||||||    |||||||| |||| |||||||||||||||||  ||||||||||| ||||||||||||||  |||| |||||     
5311 ctttccatcacaaaccataggaagatattcaatagctctatggagacaggttctgcaattgttaggggacaagtccggcgtgcactgttctagacagtac 5212  T
227 agggtctga 235  Q
    |||||||||    
5211 agggtctga 5203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 30 - 370
Target Start/End: Complemental strand, 47884 - 47547
Alignment:
30 gaacaagctcatttggtgaaggagcattaatagacctataaaaaggatatagttcatacctaatattacagctaggaaaaagaactctcccacccacctt 129  Q
    ||||||||||||||||||||| |   || |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  ||||||||  |||    
47884 gaacaagctcatttggtgaagta---ttgatagacctataaaaaggatatagttcatacctaacattacagctaggaaaaaaaaccatcccaccctgctt 47788  T
130 tccatcacaacagct-aggaagtacctcaatagcactattgagacaggttctgcaatcattaggggacaaatccggcgtgcactgagctaggcagtaaag 228  Q
    ||||||| || |||| || ||| |  ||||||||| ||| |||||||||||||||||  ||||| ||||| || ||||||||||||||||| ||||||||    
47787 tccatca-aaaagctgagcaagaaaatcaatagcagtatagagacaggttctgcaattgttaggagacaagtctggcgtgcactgagctagacagtaaag 47689  T
229 ggtctgagattcagaaatctttgcttcttttgtggcaaatttcttgttgttgtcagcagtaagtggagctgctgcttcctctgcagttttattcatcgtc 328  Q
    ||||||   ||  ||||    |||||||||||| ||||| ||||| ||  | ||  || ||||||||  ||||||||| ||||||||||  | |   ||     
47688 ggtctgttttttcgaaactcgtgcttcttttgttgcaaacttcttttttatatctccaataagtggacgtgctgcttcatctgcagtttcgtacccggtt 47589  T
329 gaaaacaataaaggcatgaagctttttgtgttagatacgttg 370  Q
    |||||||||||||||||||||||||| ||||| || ||||||    
47588 gaaaacaataaaggcatgaagcttttcgtgtttgagacgttg 47547  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 9674592 - 9674666
Alignment:
67 ataaaaaggatatagttcatacctaatattacagctaggaaaaagaactctcccacccacctttccatcacaaca 141  Q
    ||||||||| |||| |||||| |||| ||||||||||||||| | ||||||||||||   |||||||||||||||    
9674592 ataaaaagggtataattcatatctaacattacagctaggaaacaaaactctcccaccttgctttccatcacaaca 9674666  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 47635283 - 47635209
Alignment:
67 ataaaaaggatatagttcatacctaatattacagctaggaaaaagaactctcccacccacctttccatcacaaca 141  Q
    ||||||||| |||| |||||| |||| ||||||||||||||| | ||||||||||||   |||||||||||||||    
47635283 ataaaaagggtataattcatatctaacattacagctaggaaacaaaactctcccaccttgctttccatcacaaca 47635209  T

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