View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_7 (Length: 684)

Name: NF1271_low_7
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_7
NF1271_low_7
[»] chr8 (12 HSPs)
chr8 (220-655)||(36536024-36536459)
chr8 (15-150)||(36535858-36535993)
chr8 (15-150)||(3375441-3375584)
chr8 (15-150)||(5567496-5567650)
chr8 (15-150)||(30224300-30224454)
chr8 (81-150)||(25249076-25249145)
chr8 (15-79)||(25249166-25249230)
chr8 (83-150)||(3379208-3379275)
chr8 (15-79)||(6428901-6428965)
chr8 (97-150)||(6428810-6428863)
chr8 (83-150)||(31032097-31032164)
chr8 (42-79)||(31032038-31032075)
[»] chr4 (12 HSPs)
chr4 (22-150)||(23566383-23566510)
chr4 (15-150)||(18656178-18656332)
chr4 (15-150)||(7040431-7040585)
chr4 (15-150)||(23564682-23564836)
chr4 (15-79)||(52518920-52518984)
chr4 (15-79)||(52520762-52520826)
chr4 (93-150)||(3529251-3529308)
chr4 (97-150)||(52518829-52518882)
chr4 (97-150)||(52520671-52520724)
chr4 (82-150)||(54296498-54296567)
chr4 (93-149)||(23985845-23985901)
chr4 (42-79)||(56074680-56074717)
[»] chr7 (17 HSPs)
chr7 (15-79)||(28014280-28014344)
chr7 (15-79)||(20046502-20046566)
chr7 (15-79)||(28124594-28124658)
chr7 (15-79)||(28126421-28126485)
chr7 (81-150)||(44963233-44963302)
chr7 (15-79)||(4895744-4895808)
chr7 (15-79)||(44963323-44963387)
chr7 (83-150)||(4895654-4895722)
chr7 (97-150)||(28124696-28124749)
chr7 (97-150)||(28126523-28126576)
chr7 (15-79)||(25471778-25471842)
chr7 (81-150)||(20046587-20046658)
chr7 (79-116)||(4880307-4880345)
chr7 (25-79)||(8405667-8405721)
chr7 (81-119)||(28014365-28014403)
chr7 (82-119)||(25471864-25471901)
chr7 (98-150)||(37405559-37405611)
[»] chr3 (5 HSPs)
chr3 (15-150)||(1140071-1140225)
chr3 (15-79)||(17402789-17402853)
chr3 (15-79)||(6789779-6789844)
chr3 (83-150)||(6789690-6789757)
chr3 (81-150)||(17402874-17402944)
[»] chr6 (14 HSPs)
chr6 (15-79)||(5377038-5377102)
chr6 (15-79)||(5378893-5378957)
chr6 (83-149)||(1088747-1088813)
chr6 (15-79)||(19645307-19645371)
chr6 (81-150)||(19645392-19645461)
chr6 (15-79)||(1088660-1088724)
chr6 (81-150)||(5376947-5377017)
chr6 (81-150)||(5378802-5378872)
chr6 (9-59)||(31528957-31529007)
chr6 (81-118)||(15149130-15149167)
chr6 (10-79)||(20985810-20985879)
chr6 (31-79)||(8915628-8915676)
chr6 (98-150)||(15866650-15866702)
chr6 (98-150)||(15868462-15868514)
[»] chr2 (3 HSPs)
chr2 (15-150)||(29758190-29758344)
chr2 (81-119)||(8759156-8759194)
chr2 (42-79)||(18612074-18612111)
[»] chr1 (8 HSPs)
chr1 (15-79)||(17449470-17449534)
chr1 (15-79)||(16808585-16808649)
chr1 (84-150)||(17449381-17449446)
chr1 (97-150)||(16808687-16808740)
chr1 (98-150)||(9312099-9312151)
chr1 (10-79)||(48941764-48941833)
chr1 (98-150)||(3282871-3282923)
chr1 (98-150)||(3284572-3284624)
[»] scaffold0057 (2 HSPs)
scaffold0057 (83-150)||(58856-58923)
scaffold0057 (42-79)||(58945-58982)
[»] scaffold0189 (1 HSPs)
scaffold0189 (15-79)||(19105-19169)
[»] chr5 (2 HSPs)
chr5 (81-119)||(25076207-25076245)
chr5 (81-119)||(25134176-25134214)
[»] scaffold0006 (1 HSPs)
scaffold0006 (81-110)||(39254-39283)
[»] scaffold0251 (1 HSPs)
scaffold0251 (98-150)||(6296-6348)


Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 220 - 655
Target Start/End: Original strand, 36536024 - 36536459
Alignment:
Q  220 tactaactctagtcgaactattttaacacatgcaactatagagaacttacacaatcattgtcaaaggattcacacataataaactaaacaagaaagtctt 319  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36536024 tactaactctagccgaactattttaacacatgcaactatagagaacttacacaatcattgtcaaaggattcacacataataaactaaacaagaaagtctt 36536123  T
Q  320 attcaatcttaagccctcagctcccaccataatccttttgttacagttaatgcttaatttgttgatattgctattaagaagcatagtatcatataaacaa 419  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36536124 attcaatcttaagccctcagctcccaccataatccttatgttacagttaatgcttaattcgttgatattgctattaagaagcatagtatcatataaacaa 36536223  T
Q  420 aaatcctccgctttcaaaataatcaattttctccacatcatgtaaaggaaagaacctctcttgataatttataatgttataggaaaactcagctccaata 519  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36536224 aaatcctccgctttcaaaataatcaatttcctccacatcatgtaaaggaaagaacctctcttgataatttataatgttataggaaaactcagctccaaca 36536323  T
Q  520 tcatcttcaggaagccaagcaacaactccaccaacactatgtatcattttatctgtagccataagaacttcatttttccagacaccaacaggacgctcta 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36536324 tcatcttcaggaagccaagcaacaactccaccaacactatgtatcattttatctgtagccataagaacttcatttttccagacaccaacaggacgctcta 36536423  T
Q  620 aactcgtaaacataccaagagtttgcaccttcatcc 655  Q
    ||||||||||||||||||||||||||||||||||||    
T  36536424 aactcgtaaacataccaagagtttgcaccttcatcc 36536459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 15 - 150
Target Start/End: Original strand, 36535858 - 36535993
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagattgaaatgaatagattgataaaagatgatgaatgag 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36535858 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagattgaaatgaatagattgataaaagatgatgaatgag 36535957  T
Q  115 tacaacagtattgctacatatagagattagtttgag 150  Q
    |||||||||||||||| |||||||||||||||||||    
T  36535958 tacaacagtattgctatatatagagattagtttgag 36535993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 15 - 150
Target Start/End: Original strand, 3375441 - 3375584
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggaga---------ttgaaatgaatagattgataaaagatg 105  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||         | |||||||||||||||| |||||||     
T  3375441 atcatagggagaaaggtcatagatgtaagtaagatagcaagcaaaagagtactcatgtgggagatactcattgtagaaatgaatagattga-aaaagata 3375539  T
Q  106 atgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    ||||||| |||||| ||  || ||| |||||||||||||||||||    
T  3375540 atgaatgggtacaatagagttcctatatatagagattagtttgag 3375584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 5567650 - 5567496
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagatt-------------------gaaatgaatagattg 95  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||                    |||||||||||||||    
T  5567650 atcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattg 5567551  T
Q  96 ataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    |||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  5567550 ataaaagatgatgaatgagtacaatagttttcctatatatagagattagtttgag 5567496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 30224454 - 30224300
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggaga-------------------ttgaaatgaatagattg 95  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||                   | |||||||||||||||    
T  30224454 atcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattg 30224355  T
Q  96 ataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    ||||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  30224354 ataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 30224300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 25249145 - 25249076
Alignment:
Q  81 gaaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    |||||||||||||||||||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  25249145 gaaatgaatagattgataaaagatcatgaatgagtacaatagtgttcctatatatagagattagtttgag 25249076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 25249230 - 25249166
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||| || |||||| |||||||    
T  25249230 atcatagggagaaaagtcatatatgtaagcaagatagcaagcataagggtactcatgagggagat 25249166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 3379208 - 3379275
Alignment:
Q  83 aatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    ||||||||||||||||||| ||||||||||||||||| ||| || ||  |||||||||||||||||||    
T  3379208 aatgaatagattgataaaaaatgatgaatgagtacaatagttttccttaatatagagattagtttgag 3379275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 6428965 - 6428901
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    |||||| ||||| | |||||||||||||| |||||||||| ||||||||| |||||||| |||||    
T  6428965 atcataaggagagaagtcatagatgtaagtaagatagcaaacataagagtactcatgtgagagat 6428901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 6428863 - 6428810
Alignment:
Q  97 taaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    ||||||||||||||||| ||||| ||| || ||| |||||||||||||||||||    
T  6428863 taaaagatgatgaatgattacaatagtgttcctatatatagagattagtttgag 6428810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 31032097 - 31032164
Alignment:
Q  83 aatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    |||||||||||||||||||||| ||||||||||  |  | | || ||| |||||||||||||||||||    
T  31032097 aatgaatagattgataaaagatcatgaatgagtgtagtaatgttcctatatatagagattagtttgag 31032164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 31032038 - 31032075
Alignment:
Q  42 agcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  31032038 agcaagaaagcaagcataagagtactcatgtgggagat 31032075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 23566383 - 23566510
Alignment:
Q  22 ggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat--tgaaatgaatagattgataaaagatgatgaatgagtacaa 119  Q
    ||||||| ||||||||||||||||||||||||||||||||||| | |||| |||||||  | ||   | |||||||||||||||| ||||||||||||||    
T  23566383 ggagaaaagtcatagatgtaagcaagatagcaagcataagagtacccatgagggagatactcaa---agtagattgataaaagataatgaatgagtacaa 23566479  T
Q  120 cagtattgctacatatagagattagtttgag 150  Q
     ||| || ||| |||||||||||||||||||    
T  23566480 tagtgttcctatatatagagattagtttgag 23566510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 18656332 - 18656178
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagatt-------------------gaaatgaatagattg 95  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||                    |||||||||||||||    
T  18656332 atcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattg 18656233  T
Q  96 ataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    |||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  18656232 ataaaagatgatgaatgagtacaatagttttcctatatatagagattagtttgag 18656178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 7040585 - 7040431
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggaga-------------------ttgaaatgaatagattg 95  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||                   | |||||||||||||||    
T  7040585 atcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattg 7040486  T
Q  96 ataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    ||||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  7040485 ataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 7040431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 15 - 150
Target Start/End: Original strand, 23564682 - 23564836
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagatt-------------------gaaatgaatagattg 95  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||                    |||||||||||||||    
T  23564682 atcatagggagaaaagtcatagatgtaagcaaaatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattg 23564781  T
Q  96 ataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    ||||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  23564782 ataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 23564836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 52518984 - 52518920
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  52518984 atcatagggagaaagatcatagatgtaagcaagagagcaagcataagagaactcatgtgggagat 52518920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 52520826 - 52520762
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    ||||||||||||||| ||||||||||||| |||| ||||||||||||||| ||||||||||||||    
T  52520826 atcatagggagaaagatcatagatgtaagaaagagagcaagcataagagtactcatgtgggagat 52520762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 3529251 - 3529308
Alignment:
Q  93 ttgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    |||||||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  3529251 ttgataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 3529308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 52518882 - 52518829
Alignment:
Q  97 taaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    ||||||||||||| ||||||||||||| || ||| |||||||||||||||||||    
T  52518882 taaaagatgatgattgagtacaacagtgttcctatatatagagattagtttgag 52518829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 52520724 - 52520671
Alignment:
Q  97 taaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    ||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  52520724 taaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 52520671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 54296567 - 54296498
Alignment:
Q  82 aaatgaatagattgat-aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    |||||||| ||||||| ||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  54296567 aaatgaattgattgattaaaagatcatgaatgagtacaatagtgttcctatatatagagattagtttgag 54296498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 23985901 - 23985845
Alignment:
Q  93 ttgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttga 149  Q
    ||||||||||||| ||||||||||||| ||| || ||| ||||||||||||||||||    
T  23985901 ttgataaaagatggtgaatgagtacaatagtgttcctatatatagagattagtttga 23985845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 56074680 - 56074717
Alignment:
Q  42 agcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  56074680 agcaagaaagcaagcataagagtactcatgtgggagat 56074717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 8e-26; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 28014280 - 28014344
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28014280 atcatagggagaaagatcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 28014344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 20046502 - 20046566
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  20046502 atcatagggagaaaagtcatagatgtaagcgagatagcaagcataagagtactcatgtgggagat 20046566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 28124594 - 28124658
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  28124594 atcatagggagaaagatcatagatgtaagcaagagagcaagcataagagtactcatgtgggagat 28124658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 28126421 - 28126485
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  28126421 atcatagggagaaagatcatagatgtaagcaagagagcaagcataagagtactcatgtgggagat 28126485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 44963302 - 44963233
Alignment:
Q  81 gaaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    ||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||||| ||||||    
T  44963302 gaaatgaatagattgataaaagatgatgaatgagtacaatagtgttcctatatatagagattaatttgag 44963233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 4895808 - 4895744
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    ||||||||||||||| |||||||||||||||||| ||||| ||||||||| ||||| ||||||||    
T  4895808 atcatagggagaaagatcatagatgtaagcaagagagcaaacataagagtactcatctgggagat 4895744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 44963387 - 44963323
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||  ||||| |||||||    
T  44963387 atcatagggagaaaagtcatagatgtaagtaagatagcaagcataagagtattcatgagggagat 44963323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 4895722 - 4895654
Alignment:
Q  83 aatgaatagattgat-aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    |||||||| |||||| |||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  4895722 aatgaatatattgattaaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 4895654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 28124696 - 28124749
Alignment:
Q  97 taaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    ||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  28124696 taaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 28124749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 28126523 - 28126576
Alignment:
Q  97 taaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    ||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  28126523 taaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 28126576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 25471778 - 25471842
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    |||||| |||||||| ||||||||||||| |||||||||||||||||| |  ||| |||||||||    
T  25471778 atcataaggagaaagatcatagatgtaagaaagatagcaagcataagattattcacgtgggagat 25471842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 20046587 - 20046658
Alignment:
Q  81 gaaatgaatagattgat-aaaagatgatgaatgagtacaacagtattgctacatat-agagattagtttgag 150  Q
    ||||||||||||||||| |||||||  ||||||||||||| ||| || ||| |||| |||||||||||||||    
T  20046587 gaaatgaatagattgataaaaagatattgaatgagtacaatagtgttcctatatataagagattagtttgag 20046658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 4880345 - 4880307
Alignment:
Q  79 ttgaaatgaat-agattgataaaagatgatgaatgagta 116  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  4880345 ttgaaatgaattagattgataaaagatgatgaatgagta 4880307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 8405721 - 8405667
Alignment:
Q  25 gaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    ||||| ||||| |||||||||| |||||||||||||||||  ||||| |||||||    
T  8405721 gaaagatcatatatgtaagcaaaatagcaagcataagagtattcatgggggagat 8405667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 28014365 - 28014403
Alignment:
Q  81 gaaatgaatagattgataaaagatgatgaatgagtacaa 119  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  28014365 gaaatgaatagattgataaaagatgaataatgagtacaa 28014403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 25471864 - 25471901
Alignment:
Q  82 aaatgaatagattgataaaagatgatgaatgagtacaa 119  Q
    |||||||||||||||||||||||||  |||||||||||    
T  25471864 aaatgaatagattgataaaagatgaataatgagtacaa 25471901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 37405559 - 37405611
Alignment:
Q  98 aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    |||||||  ||||||||||||| ||| || ||| |||||||||||||||||||    
T  37405559 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 37405611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 8e-26; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 1140225 - 1140071
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagatt-------------------gaaatgaatagattg 95  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||                    |||||||||||||||    
T  1140225 atcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattg 1140126  T
Q  96 ataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    |||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  1140125 ataaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 1140071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 17402789 - 17402853
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17402789 atcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagat 17402853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 6789844 - 6789779
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaa-gatagcaagcataagagtgctcatgtgggagat 79  Q
    |||||||||||| | ||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  6789844 atcatagggagagaagtcatagatgtaagcaaagatagcaagcataagagtactcatgtgggagat 6789779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 6789757 - 6789690
Alignment:
Q  83 aatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    |||||||||||||| |||||||  ||||||||||||| |||||| ||| |||||||||||||||||||    
T  6789757 aatgaatagattgaaaaaagatagtgaatgagtacaatagtattcctatatatagagattagtttgag 6789690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 17402874 - 17402944
Alignment:
Q  81 gaaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatat-agagattagtttgag 150  Q
    ||||||||||||||||||||||||  ||||||||||||| ||| || ||| |||| |||||||||||||||    
T  17402874 gaaatgaatagattgataaaagatattgaatgagtacaatagtgttcctatatataagagattagtttgag 17402944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 5377102 - 5377038
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5377102 atcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagat 5377038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 5378957 - 5378893
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5378957 atcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagat 5378893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 1088747 - 1088813
Alignment:
Q  83 aatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttga 149  Q
    ||||||||||||||||||||||||||||||||||||| ||| || ||| ||||||||||||||||||    
T  1088747 aatgaatagattgataaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttga 1088813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 19645307 - 19645371
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    |||||||||||||| ||||||||||||| |||||||||||| |||||||| |||||| |||||||    
T  19645307 atcatagggagaaaagtcatagatgtaaccaagatagcaagtataagagtactcatgagggagat 19645371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 19645392 - 19645461
Alignment:
Q  81 gaaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    ||||| |||||||||||||||||| |||||||||||||| ||| ||  || |||||||||||||||||||    
T  19645392 gaaataaatagattgataaaagataatgaatgagtacaatagtgttcttatatatagagattagtttgag 19645461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 1088660 - 1088724
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    |||||||| ||| | ||||||||||||||||||||||||| ||||||||| ||||| ||||||||    
T  1088660 atcataggaagagaagtcatagatgtaagcaagatagcaaacataagagtactcatatgggagat 1088724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 5377017 - 5376947
Alignment:
Q  81 gaaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatat-agagattagtttgag 150  Q
    ||||||||||||||||||||||||  ||||||||||||| ||| || ||| |||| |||||||||||||||    
T  5377017 gaaatgaatagattgataaaagatattgaatgagtacaatagtgttcctatatataagagattagtttgag 5376947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 5378872 - 5378802
Alignment:
Q  81 gaaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatat-agagattagtttgag 150  Q
    ||||||||||||||||||||||||  ||||||||||||| ||| || ||| |||| |||||||||||||||    
T  5378872 gaaatgaatagattgataaaagatattgaatgagtacaatagtgttcctatatataagagattagtttgag 5378802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 31529007 - 31528957
Alignment:
Q  9 tgtagtatcatagggagaaaggtcatagatgtaagcaagatagcaagcata 59  Q
    ||||| ||||||||||  ||| |||||||||||||||||||||||||||||    
T  31529007 tgtagaatcatagggatgaagatcatagatgtaagcaagatagcaagcata 31528957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 15149130 - 15149167
Alignment:
Q  81 gaaatgaatagattgataaaagatgatgaatgagtaca 118  Q
    |||||||||||||||||||||||| |||||||||||||    
T  15149130 gaaatgaatagattgataaaagataatgaatgagtaca 15149167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 20985810 - 20985879
Alignment:
Q  10 gtagtatcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    |||| ||||||||||  ||| |||||||||||| |||| | |||||||||||||| ||||||||| ||||    
T  20985810 gtagaatcatagggatcaagatcatagatgtaatcaagtttgcaagcataagagtactcatgtggtagat 20985879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 8915676 - 8915628
Alignment:
Q  31 tcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    |||||||||||||||||| ||||||||||||||| ||| ||||| ||||    
T  8915676 tcatagatgtaagcaagagagcaagcataagagtactcgtgtggaagat 8915628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 15866702 - 15866650
Alignment:
Q  98 aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    ||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  15866702 aaaagataatgaatgagtacaatagtgttcctaaatatagagattagtttgag 15866650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 15868514 - 15868462
Alignment:
Q  98 aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    ||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  15868514 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 15868462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 29758344 - 29758190
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggaga-------------------ttgaaatgaatagattg 95  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||                   | |||||||||||||||    
T  29758344 atcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattg 29758245  T
Q  96 ataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    ||||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  29758244 ataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 29758190  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 8759156 - 8759194
Alignment:
Q  81 gaaatgaatagattgataaaagatgatgaatgagtacaa 119  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  8759156 gaaatgaacagattgataaaagatgatgaatgagtacaa 8759194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 18612074 - 18612111
Alignment:
Q  42 agcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  18612074 agcaagaaagcaagcataagagtactcatgtgggagat 18612111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 17449534 - 17449470
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  17449534 atcatagggagaaaggtcatagatgtaagcaagatagcaagcaaaagagtactcatgtgggagat 17449470  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 16808585 - 16808649
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| ||||||    
T  16808585 atcatagggagaaagatcatagatgtaagcaagagagcaagcataagagtactcatgtcggagat 16808649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 17449446 - 17449381
Alignment:
Q  84 atgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    ||||||||||||| ||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  17449446 atgaatagattga-aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 17449381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 16808687 - 16808740
Alignment:
Q  97 taaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    ||||||||||||||||||||||| ||| ||  || |||||||||||||||||||    
T  16808687 taaaagatgatgaatgagtacaatagtgttcatatatatagagattagtttgag 16808740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 9312151 - 9312099
Alignment:
Q  98 aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    ||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  9312151 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 9312099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 48941833 - 48941764
Alignment:
Q  10 gtagtatcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    |||| ||||||||||  ||| | |||||||||||||||| |||||| ||||||||  ||||||| |||||    
T  48941833 gtagaatcatagggacgaagattatagatgtaagcaagagagcaagtataagagtattcatgtgagagat 48941764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 3282923 - 3282871
Alignment:
Q  98 aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    |||||||  ||||||||||||| ||| || ||| |||||||||||||||||||    
T  3282923 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 3282871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 3284624 - 3284572
Alignment:
Q  98 aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    |||||||  ||||||||||||| ||| || ||| |||||||||||||||||||    
T  3284624 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 3284572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 58923 - 58856
Alignment:
Q  83 aatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    ||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  58923 aatgaatagattgataaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 58856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 58982 - 58945
Alignment:
Q  42 agcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  58982 agcaagaaagcaagcataagagtactcatgtgggagat 58945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 19169 - 19105
Alignment:
Q  15 atcatagggagaaaggtcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagat 79  Q
    ||||||||||||||  ||||||||||||||||||||| ||||||| |||| ||||||||||||||    
T  19169 atcatagggagaaaaatcatagatgtaagcaagatagaaagcataggagtactcatgtgggagat 19105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 25076207 - 25076245
Alignment:
Q  81 gaaatgaatagattgataaaagatgatgaatgagtacaa 119  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  25076207 gaaatgaatatattgataaaagatgatgaaagagtacaa 25076245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 25134176 - 25134214
Alignment:
Q  81 gaaatgaatagattgataaaagatgatgaatgagtacaa 119  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  25134176 gaaatgaatatattgataaaagatgatgaaagagtacaa 25134214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 110
Target Start/End: Complemental strand, 39283 - 39254
Alignment:
Q  81 gaaatgaatagattgataaaagatgatgaa 110  Q
    ||||||||||||||||||||||||||||||    
T  39283 gaaatgaatagattgataaaagatgatgaa 39254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 6348 - 6296
Alignment:
Q  98 aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 150  Q
    |||||||  ||||||||||||| ||| || ||| |||||||||||||||||||    
T  6348 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 6296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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