View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_72 (Length: 408)
Name: NF1271_low_72
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_72 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 109 - 379
Target Start/End: Complemental strand, 5957250 - 5956989
Alignment:
| Q |
109 |
gttggtgttttgcttctaaattctaaggcagaagaagagtttacgactaaatctaattaaattcacaaaagacttgttaaaaatgtcagtgagtgcttag |
208 |
Q |
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| T |
5957250 |
gttggtgttttgcttctaaat-ctgaggcagaagaagagtttacgactaaatctaa----attcacaaaagacttgttaaaaatgtcagtgagtgcttag |
5957156 |
T |
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| Q |
209 |
tgtccattgaaattcatgatatatatgatgatgcatctacttttcatttcatttgtaatttgcaaccgatgagttggattatttagatatccctccatat |
308 |
Q |
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| T |
5957155 |
tgtccattgaaattcatgatat----gatgatgcatctacttttcatttcatttgtaatttgcaaccgatgagttagattatttaaatatccctccatat |
5957060 |
T |
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| Q |
309 |
ttgtaataaatgatgcatgtaatttgacgttgaactatgttgttacttcactagaaatcttatgaattatc |
379 |
Q |
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| T |
5957059 |
ttgtaataaatgatgcatgtaatttgacgttgaactatgttgttacttcactagaaatgttatgaattatc |
5956989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 5950792 - 5950734
Alignment:
| Q |
271 |
caaccgatgagttggattatttagatatccctccatatttgtaataaatgatgcatgtaa |
330 |
Q |
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| T |
5950792 |
caaccgatgagttggattatttagaaatccctcc-gaattgcaataaatgatgcatgtaa |
5950734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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