View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_75 (Length: 400)
Name: NF1271_low_75
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_75 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 30 - 400
Target Start/End: Complemental strand, 31721415 - 31721045
Alignment:
| Q |
30 |
catcaaacttaacaatacctgacaaaaatgtgttagatggatagtcaaagctttgccacaaataggtttcactgccattatcttttatgacaagattgcc |
129 |
Q |
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| T |
31721415 |
catcaaacttaacaatacctgacaaaaatgtgttagatggatagtcaaagctttgccacaaataggtttcattgccattatcttttatgacaagattgcc |
31721316 |
T |
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| Q |
130 |
agtatccaagagttgtgccactggtttctgtacatttgtggaagaatttgtgaaccaaataatgttgttttcgtgagtaaggaccaaacttccagaactg |
229 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31721315 |
agtatccaagagttgtgcaactggtttctgtacatttgtggaagaatttgtgaaccaaataatgttgttttcgtgagtaaggaccaaacttccagaactg |
31721216 |
T |
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| Q |
230 |
tttagtttcaaaatggcaaaagagtcattgattggtttgccaccatttgcaacccaaacaacattttgagttggaatattcttgaatcggattccgaggt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31721215 |
tttagtttcaaaatggcaaaagagtcattgattggtatgccaccatttgcaacccaaacaacattttgagttggaatattcttgaatcggattccgaggt |
31721116 |
T |
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| Q |
330 |
agcgtttgtttggatttgtaaaactgaagaaaccaagctcaaagagtccttttggtgaaacaatggtctct |
400 |
Q |
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| T |
31721115 |
agcgtttgtttggatttgtaatactgaagaaaccaagctcaaagagtccttttggtgaaacaatggtctct |
31721045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 31 - 400
Target Start/End: Complemental strand, 31715544 - 31715172
Alignment:
| Q |
31 |
atcaaacttaacaatacctgacaaaaatgtgttagatggatagtcaaagctttgccacaaataggtttcactgccattatctt---ttatgacaagattg |
127 |
Q |
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||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||| || |||||| |||||||||||||| |
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| T |
31715544 |
atcaatcttaacaatacctgacaacaatgtattagatggatagtcaaagctttgccacagataggtttcactgacactatcttcttttatgacaagattg |
31715445 |
T |
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| Q |
128 |
ccagtatccaagagttgtgccactggtttctgtacatttgtggaagaatttgtgaaccaaataatgttgttttcgtgagtaaggaccaaacttccagaac |
227 |
Q |
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| T |
31715444 |
ccagtatccaggagttgtgccactggtttctgtgcttttgtggaagaatttgtgaaccaaacaatgttgttgttatgagtaaggaccaaactgccagagc |
31715345 |
T |
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| Q |
228 |
tgtttagtttcaaaatggcaaaagagtcattgattggtttgccaccatttgcaacccaaacaacattttgagttggaatattcttgaatcggattccgag |
327 |
Q |
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| T |
31715344 |
tatttagtttcaaaatggcagaagagtcattaattggcttgccaccatttgcaacccaaacaacattttgagtcgaaatattcttgaatcggattccgag |
31715245 |
T |
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| Q |
328 |
gtagcgtttgtttggatttgtaaaactgaagaaaccaagctcaaagagtccttttggtgaaacaatggtctct |
400 |
Q |
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| T |
31715244 |
gtagcgcttgtttggatttgtaatactgaagaaaccaagctcaaagagtccttttggtgaaacaatggtctct |
31715172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 38 - 400
Target Start/End: Complemental strand, 31700265 - 31699903
Alignment:
| Q |
38 |
ttaacaatacctgacaaaaatgtgttagatggatagtcaaagctttgccacaaataggtttcactgccattatcttttatgacaagattgccagtatcca |
137 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| | || ||||||||| ||||||||||||||||||| |
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| T |
31700265 |
ttaacaatacctgacaacaatgtattagatggatagtcaaagctttgccacagataggtttccgttacactatcttttacaacaagattgccagtatcca |
31700166 |
T |
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| Q |
138 |
agagttgtgccactggtttctgtacatttgtggaagaatttgtgaaccaaataatgttgttttcgtgagtaaggaccaaacttccagaactgtttagttt |
237 |
Q |
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| T |
31700165 |
agagttgtgccactggtttctgtacatttgtggaagaatttgtgaaccaaacaatgtcgttgttatgagtaagaaccaaactgccagagctgtttaattt |
31700066 |
T |
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| Q |
238 |
caaaatggcaaaagagtcattgattggtttgccaccatttgcaacccaaacaacattttgagttggaatattcttgaatcggattccgaggtagcgtttg |
337 |
Q |
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|||| ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31700065 |
caaagtggcagaagagtcattgattggcttgccaccatttgcaacccagacaacattttgagttggaatattcttgaatcgaattccgaggtagcgtttg |
31699966 |
T |
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| Q |
338 |
tttggatttgtaaaactgaagaaaccaagctcaaagagtccttttggtgaaacaatggtctct |
400 |
Q |
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| T |
31699965 |
tttggatttgtaatactgaagaaaccaagctcaaagagtccttttggtgaaccaatggtctct |
31699903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 31705217 - 31705171
Alignment:
| Q |
114 |
ttatgacaagattgccagtatccaagagttgtgccactggtttctgt |
160 |
Q |
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||||||||||||||||| |||||||||| | ||||| |||||||||| |
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| T |
31705217 |
ttatgacaagattgccactatccaagagctctgccattggtttctgt |
31705171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 31694741 - 31694697
Alignment:
| Q |
114 |
ttatgacaagattgccagtatccaagagttgtgccactggtttct |
158 |
Q |
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| T |
31694741 |
ttatgacaagattgccactatccaagagctctgccattggtttct |
31694697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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