View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_76 (Length: 399)

Name: NF1271_low_76
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_76
NF1271_low_76
[»] chr4 (4 HSPs)
chr4 (16-212)||(55993873-55994069)
chr4 (107-156)||(27123324-27123373)
chr4 (120-169)||(6428080-6428129)
chr4 (121-202)||(19394689-19394770)
[»] chr7 (2 HSPs)
chr7 (91-152)||(33645937-33645998)
chr7 (112-201)||(39542227-39542316)
[»] chr6 (3 HSPs)
chr6 (107-156)||(2460123-2460172)
chr6 (107-156)||(34939562-34939611)
chr6 (120-156)||(31594356-31594392)
[»] chr5 (1 HSPs)
chr5 (108-151)||(41016228-41016271)
[»] chr8 (4 HSPs)
chr8 (102-156)||(30600321-30600375)
chr8 (107-156)||(26371014-26371063)
chr8 (120-156)||(30987963-30987999)
chr8 (108-156)||(40280198-40280246)
[»] chr3 (2 HSPs)
chr3 (119-156)||(49605823-49605860)
chr3 (107-155)||(1810026-1810074)
[»] chr1 (2 HSPs)
chr1 (104-156)||(4548767-4548819)
chr1 (91-155)||(27140511-27140575)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 55994069 - 55993873
Alignment:
Q  16 atagtactagaaatcaaaaaactgataagtagtagtagagtttcttttgatgacaacaacaatggaatgaagtttttatgcaaatcaactaaaaacaact 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  55994069 atagtactagaaatcaaaaaactgataagtagtagtagagtttcttttgatgacaacaacaatggaatgaagtttttatgcaaatcaactaaaatcaact 55993970  T
Q  116 cacagacatgtcataagtagtttccataaactctctcaaactgcctgacaagtggttttactcgtaactaaactcaaataaatcaattcatacatga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  55993969 cacagacatgtcataagtagtttccataaactctctcaaactgcctgacaagtggttttacccgtaaataaactcaaataaatcaattcatacatga 55993873  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 27123373 - 27123324
Alignment:
Q  107 aaaacaactcacagacatgtcataagtagtttccataaactctctcaaac 156  Q
    ||||||||| | ||||||||||||||| |||||||||| |||||||||||    
T  27123373 aaaacaacttaaagacatgtcataagttgtttccataagctctctcaaac 27123324  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 6428080 - 6428129
Alignment:
Q  120 gacatgtcataagtagtttccataaactctctcaaactgcctgacaagtg 169  Q
    |||||||||||||| |||| ||||| ||||||||||||| || |||||||    
T  6428080 gacatgtcataagttgttttcataatctctctcaaactgtctcacaagtg 6428129  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 19394770 - 19394689
Alignment:
Q  121 acatgtcataagtagtttccataaactctctcaaactgcctgacaagtggttttactcgtaactaaactcaaataaatcaat 202  Q
    |||||| |||||| ||||| |||| ||||  ||||| | || ||||||| |||| ||||||  |||||||||||||||||||    
T  19394770 acatgtaataagttgtttctataagctctggcaaacagtctcacaagtgtttttgctcgtagttaaactcaaataaatcaat 19394689  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 33645998 - 33645937
Alignment:
Q  91 ttatgcaaatcaactaaaaacaactcacagacatgtcataagtagtttccataaactctctc 152  Q
    ||||| |||| | |||||||||||| | ||||||||||||||| |||||||||| |||||||    
T  33645998 ttatggaaataacctaaaaacaacttatagacatgtcataagttgtttccataagctctctc 33645937  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 39542316 - 39542227
Alignment:
Q  112 aactcacagacatgtcataagtagtttccataaactctctcaaactgcctgacaagtggttttactcgtaactaaactcaaataaatcaa 201  Q
    |||| |||||||||||||||||  ||||||||| |||||| |||||| ||  |||||| || | || |||  ||||||||||||| ||||    
T  39542316 aactgacagacatgtcataagttatttccataagctctctaaaactgtctcgcaagtgcttatgctagtagataaactcaaataagtcaa 39542227  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 2460172 - 2460123
Alignment:
Q  107 aaaacaactcacagacatgtcataagtagtttccataaactctctcaaac 156  Q
    ||||||||| | ||||||||||||||| |||||||||| |||||||||||    
T  2460172 aaaacaacttaaagacatgtcataagttgtttccataagctctctcaaac 2460123  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 34939562 - 34939611
Alignment:
Q  107 aaaacaactcacagacatgtcataagtagtttccataaactctctcaaac 156  Q
    ||||||||| || ||| |||||||||| |||||||||| |||||||||||    
T  34939562 aaaacaacttacggacgtgtcataagttgtttccataagctctctcaaac 34939611  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 31594392 - 31594356
Alignment:
Q  120 gacatgtcataagtagtttccataaactctctcaaac 156  Q
    |||||||||||||| |||||||||| |||||||||||    
T  31594392 gacatgtcataagttgtttccataacctctctcaaac 31594356  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 108 - 151
Target Start/End: Original strand, 41016228 - 41016271
Alignment:
Q  108 aaacaactcacagacatgtcataagtagtttccataaactctct 151  Q
    |||||||||||| ||||| ||||||| |||||||||||||||||    
T  41016228 aaacaactcacaaacatgccataagttgtttccataaactctct 41016271  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 30600375 - 30600321
Alignment:
Q  102 aactaaaaacaactcacagacatgtcataagtagtttccataaactctctcaaac 156  Q
    ||||||||||||||||   ||||||||| ||| |||||||||| |||||||||||    
T  30600375 aactaaaaacaactcatgaacatgtcatgagttgtttccataagctctctcaaac 30600321  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 26371014 - 26371063
Alignment:
Q  107 aaaacaactcacagacatgtcataagtagtttccataaactctctcaaac 156  Q
    ||||||||| ||  ||||||||||||||||||||||||  ||||||||||    
T  26371014 aaaacaactgacgcacatgtcataagtagtttccataagatctctcaaac 26371063  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 30987999 - 30987963
Alignment:
Q  120 gacatgtcataagtagtttccataaactctctcaaac 156  Q
    |||||||||||||| |||||||||| |||||||||||    
T  30987999 gacatgtcataagttgtttccataagctctctcaaac 30987963  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 40280246 - 40280198
Alignment:
Q  108 aaacaactcacagacatgtcataagtagtttccataaactctctcaaac 156  Q
    |||||||| ||| | || |||||||| ||||||||||||||||||||||    
T  40280246 aaacaacttacaaatatttcataagttgtttccataaactctctcaaac 40280198  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 49605860 - 49605823
Alignment:
Q  119 agacatgtcataagtagtttccataaactctctcaaac 156  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  49605860 agacatgtcataagttgtttccatgaactctctcaaac 49605823  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 1810026 - 1810074
Alignment:
Q  107 aaaacaactcacagacatgtcataagtagtttccataaactctctcaaa 155  Q
    |||||||||||  |||||||||||||| |||||| ||| ||||||||||    
T  1810026 aaaacaactcatggacatgtcataagttgtttccgtaagctctctcaaa 1810074  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 4548767 - 4548819
Alignment:
Q  104 ctaaaaacaactcacagacatgtcataagtagtttccataaactctctcaaac 156  Q
    |||||||||||| |||| |||||||||||| |||||||| |  ||||||||||    
T  4548767 ctaaaaacaacttacaggcatgtcataagttgtttccattaggtctctcaaac 4548819  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 27140511 - 27140575
Alignment:
Q  91 ttatgcaaatcaactaaaaacaactcacagacatgtcataagtagtttccataaactctctcaaa 155  Q
    |||||||||| | || ||||||||| |  |||||||||||||  |||||| ||||||||||||||    
T  27140511 ttatgcaaataagctgaaaacaacttatggacatgtcataagctgtttccttaaactctctcaaa 27140575  T

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