View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_77 (Length: 397)
Name: NF1271_low_77
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_77 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 23 - 303
Target Start/End: Original strand, 11491306 - 11491586
Alignment:
| Q |
23 |
aatatggcaagggacgttggaaagatatttcaaaagaatttgtggtgacaaagactccaattcaaattgctagccatgcccaaaaatactttatccacca |
122 |
Q |
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| T |
11491306 |
aatatggcaagggacgttggaaagatatttcaaaagaatttgtggtaacaaagactccaattcaaattgctagccatgcccaaaaatactttatccacca |
11491405 |
T |
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| Q |
123 |
aaatgtgaaagatatagagaagaggaaaaagagaagaagcatacatgacacaaccttaaacaagaatggcacactagtcactctcgctgttgaacaagat |
222 |
Q |
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| T |
11491406 |
aaatgtgaaagatatagagaagaggaaaaagagaagaagcatacatgacacaaccttaaacaagaatggcacactagtcactctcgctgttgaacaagat |
11491505 |
T |
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| Q |
223 |
gagattccttcagtcgagcaacaaagtgagactcctcctcaaggaatgcaacagacacaaacacaacaaaatgagatttct |
303 |
Q |
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| T |
11491506 |
gagattccttcagtcgagcaacaaagtgagactcctcctcaaggaatgcaacagacacaaacacaacaaaatgagatttct |
11491586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 26 - 303
Target Start/End: Original strand, 38166582 - 38166865
Alignment:
| Q |
26 |
atggcaagggacgttggaaagatatttcaaaagaatttgtggtgacaaagactccaattcaaattgctagccatgcccaaaaatactttatccaccaaaa |
125 |
Q |
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|||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38166582 |
atggaaagggacgctggaaagatatttcaaaagaattcgtggtgacaaaaactccaactcaaattgctagccatgcccaaaaatactttatccaccaaaa |
38166681 |
T |
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| Q |
126 |
tgtgaaagatatagagaaga---ggaaaaagagaagaagcatacatgacacaaccttaaacaagaatggcacactagtcactctcgctgttgaaca---a |
219 |
Q |
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| T |
38166682 |
tgtgaaagatatagagaagaaggagaaaaagagaaaaagtattcacgacacaaccttaaacaagaatgacacattggttactgtcgctgttgaacagcga |
38166781 |
T |
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| Q |
220 |
gatgagattccttcagtcgagcaacaaagtgagactcctcctcaaggaatgcaacagacacaaacacaacaaaatgagatttct |
303 |
Q |
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||||||||||||||||| |||| |||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38166782 |
gatgagattccttcagttgagctacaaagtgtgattcctcctcaaggaatgcaacagacacaaacacaacagaatgagatttct |
38166865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 26 - 303
Target Start/End: Complemental strand, 38173298 - 38173015
Alignment:
| Q |
26 |
atggcaagggacgttggaaagatatttcaaaagaatttgtggtgacaaagactccaattcaaattgctagccatgcccaaaaatactttatccaccaaaa |
125 |
Q |
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|||| |||||| | ||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38173298 |
atggaaagggatgctggaaagatatttcaaaagaattcgtggtgacaaaaactccaactcaaattgctagccatgcccaaaaatactttatccaccaaaa |
38173199 |
T |
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| Q |
126 |
tgtgaaagatatagagaaga---ggaaaaagagaagaagcatacatgacacaaccttaaacaagaatggcacactagtcactctcgctgttgaaca---a |
219 |
Q |
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| T |
38173198 |
tgtgaaagatatagagaagaaggagaaaaagagaaaaagtattcacgacacaaccttaaacaagaatgacacattggttactgtcgctgttgaacagcga |
38173099 |
T |
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| Q |
220 |
gatgagattccttcagtcgagcaacaaagtgagactcctcctcaaggaatgcaacagacacaaacacaacaaaatgagatttct |
303 |
Q |
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| T |
38173098 |
gatgagattccttcagttgagctacaaagtgtgattcctcctcaaggaatgcaacagacacaaacacaacagaatgagatttct |
38173015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 26 - 303
Target Start/End: Complemental strand, 38200522 - 38200239
Alignment:
| Q |
26 |
atggcaagggacgttggaaagatatttcaaaagaatttgtggtgacaaagactccaattcaaattgctagccatgcccaaaaatactttatccaccaaaa |
125 |
Q |
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|||| |||||| | ||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38200522 |
atggaaagggatgctggaaagatatttcaaaagaattcgtggtgacaaaaactccaactcaaattgctagccatgcccaaaaatactttatccaccaaaa |
38200423 |
T |
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| Q |
126 |
tgtgaaagatatagagaaga---ggaaaaagagaagaagcatacatgacacaaccttaaacaagaatggcacactagtcactctcgctgttgaaca---a |
219 |
Q |
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| T |
38200422 |
tgtgaaagatatagagaagaaggagaaaaagagaaaaagtattcacgacacaaccttaaacaagaatgacacattggttactgtcgctgttgaacagcga |
38200323 |
T |
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| Q |
220 |
gatgagattccttcagtcgagcaacaaagtgagactcctcctcaaggaatgcaacagacacaaacacaacaaaatgagatttct |
303 |
Q |
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| T |
38200322 |
gatgagattccttcagttgagctacaaagtgtgattcctcctcaaggaatgcaacagacacaaacacaacagaatgagatttct |
38200239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 33 - 219
Target Start/End: Original strand, 11484467 - 11484656
Alignment:
| Q |
33 |
gggacgttggaaagatatttcaaaagaatttgtggtgacaaagactccaattcaaattgctagccatgcccaaaaatactttat---ccaccaaaatgtg |
129 |
Q |
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||||||||||||||||||||||| |||||||||| ||||| ||||||| |||||||||||| ||||| |||||||||||| | |||||||| || |
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| T |
11484467 |
gggacgttggaaagatatttcaagagaatttgtgaaaacaaaaactccaactcaaattgctagtcatgctcaaaaatactttgttcaccaccaaactgcc |
11484566 |
T |
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| Q |
130 |
aaagatatagagaagaggaaaaagagaagaagcatacatgacacaaccttaaacaagaatggcacactagtcactctcgctgttgaacaa |
219 |
Q |
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| T |
11484567 |
aaagaaatagagaagaagaaaaagagaagaagtattcacgacataaccttaaacaataatgacacaatagtcactgtccctcttgaacaa |
11484656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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