View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_78 (Length: 396)
Name: NF1271_low_78
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_78 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 29 - 386
Target Start/End: Complemental strand, 3090443 - 3090085
Alignment:
| Q |
29 |
aattttaaggtttaaattgaatattaaaatgaagtttttctgtacaaaaaagaagttgtcactcaaatagtcaaatttgatcttgcaacctagtcaagaa |
128 |
Q |
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| T |
3090443 |
aattttaaggtttaaattgaatattaaaatgaagtttttctgtacaaaaaagaagttgtcactcaaatagtcaaatttgatcttgcaacctagtcaagaa |
3090344 |
T |
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| Q |
129 |
gagatagttgctggaccagttgagctacattgtcatcgtatagaattttcaactttcatatttaatatttgtaaaataaaattcgtttgaaggcctaaaa |
228 |
Q |
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| T |
3090343 |
gagatagttgctggaccagttgagctacattgtcatcgtatagaattttcaactttcatatttaatatttgtacagtaaaattcgtttggaggcctaaaa |
3090244 |
T |
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| Q |
229 |
gatctttagaatttggaccgtcttatgcttggatcgaccctagatataaatataatataaccatgctactttgcttcttctttttttctcattaa-nnnn |
327 |
Q |
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| T |
3090243 |
gatctttagaatttggaccgtcttatgtttggatcgaccctagatataaatataatataaccatgctactttgcttcttctttttttctcattaattttt |
3090144 |
T |
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| Q |
328 |
nnnnnngagagatttttctcattaattataagtaggatatttcgaagtggttccctttg |
386 |
Q |
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| T |
3090143 |
ttttttgagagatttttctcattaattataagtaggatatttcgaagtggttccctttg |
3090085 |
T |
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