View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_8 (Length: 666)
Name: NF1271_low_8
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 30 - 374
Target Start/End: Complemental strand, 35921307 - 35920964
Alignment:
| Q |
30 |
aggccaatgtctccaccacctgctaaagattcttctggagatgatagtaatgattcagattatgatgaaaaggatgatgaaagtagcatccataaaagag |
129 |
Q |
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| T |
35921307 |
aggccaatgtctccaccacctgctaaagattcttctggagatgatagtaatgattcagattatgatgaagaggatgatgaaagtagcatccataaaagag |
35921208 |
T |
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| Q |
130 |
agcatcatcatggtccaaacaaatttgttcttggtgtggcaattgctctttcttccattgtctttttgattgtgttcttaatcctatgttcaaagtgctg |
229 |
Q |
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| T |
35921207 |
agcatcatcatggtccaaacaaatttgttcttggtgtggcaattgctctttcttccattgtctttttgattgtgttcttaatcctatgttcaaagtgctg |
35921108 |
T |
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| Q |
230 |
tcgctgaagaaa-nnnnnnnnnnnnnnnnncactttatagaatttggatggattaggaaaattgataattttaaggcaattggtgcttttttaattaatt |
328 |
Q |
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| T |
35921107 |
tcgctgaagaaacttttttattatttttttcactttatagaatttggatggattagg-aaattgataa-tttaaggcaattggtgcttatttaattaatt |
35921010 |
T |
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| Q |
329 |
aatttattatatactggttagcaaaagagaaatgggaggtgattgc |
374 |
Q |
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| T |
35921009 |
aatttattatataatggttagcaaaagagaaatgggaggtgattgc |
35920964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 402 - 649
Target Start/End: Complemental strand, 35920937 - 35920690
Alignment:
| Q |
402 |
tgctcttttttgttttaattgggtgatatagtatatgaaaggcacccattagaaataggagaatggaaaaaacaatgaattggaattttattttagcttc |
501 |
Q |
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| T |
35920937 |
tgctcttttttgttttggttgggtgatatagtatatgaaaggcacccattagaaataggagaatggaaaaaacaatgaattggaattttattttagcttc |
35920838 |
T |
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| Q |
502 |
ttttactattataatgtagtaatcagatgctttctgtagtgcaataagttacaaaatttgcatggaatgcttggctagcatacttctctttagtcttcag |
601 |
Q |
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| T |
35920837 |
ttttactattataatgtagtaatcagatgctttctgcagtgcaataagttacaaaatttgcatggaatgcttggctagcatacttctctttagtcttcag |
35920738 |
T |
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| Q |
602 |
tactgtttagctattttaatcagttgcttgtgcatgcttctcttgttc |
649 |
Q |
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| T |
35920737 |
tactgttaaactattttaatcagttgcttgtgcatgcttctattgttc |
35920690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 5123322 - 5123246
Alignment:
| Q |
135 |
catcatggtccaaacaaatttgttcttggtgtggcaattgctctttcttccattgtctttttgattgtgttcttaat |
211 |
Q |
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|||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||| ||| | ||||| |||||||| |
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| T |
5123322 |
catcatggaccaaacaagtttgttcttggtgtggctattgcactttcttccattgtttttcttattgttttcttaat |
5123246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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