View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271_low_80 (Length: 396)

Name: NF1271_low_80
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271_low_80
NF1271_low_80
[»] chr2 (1 HSPs)
chr2 (17-313)||(45254473-45254768)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 45254473 - 45254768
Alignment:
Q  17 tgatcagtatttgtggagtcaataagcggagcattggaaaagtttctgtttccggtgctggaaatgaattgtggctgcccagaattagaagaacctggga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45254473 tgatcagtatttgtggagtcaataagcggagcattggaaaagtttctgtttccggtgctggaaatgaattgtggctgcccagaattagaagaacatggga 45254572  T
Q  117 cagccatattctcttgatattcctctttctgcagc--nnnnnnnnngaacaacaaatctttcagtcaagtaaagtcaaacatgcagatttatatatnnnn 214  Q
    |||||||||||||||||||||||||||||||||||           ||||||||||||||||||| |||||||||||||||||||||||||||||         
T  45254573 cagccatattctcttgatattcctctttctgcagcaaaaaaaaaaagaacaacaaatctttcagtgaagtaaagtcaaacatgcagatttatata---aa 45254669  T
Q  215 nnnnnnntgtactatttctaagattatgatgaatgaacaacatgcatgctaaaataaattgagtagctcgattagaaatagtaataagaagatgaaaat 313  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45254670 aaaaaaatgtactatttctaagattatgatgaatgaacaacatgcatgctaaaataaattgagtagctcgattagaaatagtaataagaagatgaaaat 45254768  T

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