View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_82 (Length: 392)
Name: NF1271_low_82
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_82 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 14 - 382
Target Start/End: Complemental strand, 23606555 - 23606187
Alignment:
| Q |
14 |
agatccagacacattacacagagaaagatagagatacttagttgtaaccagataaagcaggtttcaaacttcaaagaatgcaatgggtagagaagaagat |
113 |
Q |
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| T |
23606555 |
agatacagacacattacacagagaaagatggagatacttagttgtaaccagataaagcaggtttcaaacttcaaagaatgcaatgggtagagaagaagat |
23606456 |
T |
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| Q |
114 |
tcaaattgtggggatgcatgtgaatgatgcgaggaagatgcgtgtaacaggttaaaaaacacgtgttaagtttggaatggtttagggcatgcagattact |
213 |
Q |
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| T |
23606455 |
ccaaattgtggggatgcatgtgaatgatgcgaggaagatgcgtgtaacaggttaaaaaacacgtgttaagtttggaatggtttagggcatgcagattact |
23606356 |
T |
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| Q |
214 |
aaaccaaaacaccaagttgatgttggacgttagtgccattaatgtgactgttgcatgctaagacatgcagtcaacgaagtacagggtgtaaaacaagaca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23606355 |
aaaccaaaacaccaagttgatgttggacgttagtgccattaatgtgactgttgcatgctaagacatgcagtcaacgaagtacagggtgtaaaacaagaca |
23606256 |
T |
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| Q |
314 |
tgataggtgaaggatcatgctattcaattcctcaagaataacgggcttttgcgctgattgttgtctgtg |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23606255 |
tgataggtgaaggatcatgctattcaattcctcaagaataacgggcttttgcgctgattgttgtgtgtg |
23606187 |
T |
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