View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271_low_87 (Length: 388)
Name: NF1271_low_87
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271_low_87 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 209 - 383
Target Start/End: Original strand, 36800462 - 36800636
Alignment:
| Q |
209 |
ggtggtgggagtggttctagttgagtagtggtttggtttggtttttcaacactggaagccatatatatataacnnnnnnncaacctaaaaactttgtctc |
308 |
Q |
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| T |
36800462 |
ggtggtgggagtggttctagttgagtagtggtttggtttggtttttcaacactggaagccatatatatataacaaaaaaacaacctaaaaactttgtctc |
36800561 |
T |
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| Q |
309 |
ttactcttgttttttaagtagtagtagtaaactctttcgtaagcttcatgaatgatgaaaccgccctttgcttct |
383 |
Q |
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| T |
36800562 |
ttactcttgttttttaagtagtagtagtaaactctttcgtaagcttcatgaatgatgaaaccgccttttgtttct |
36800636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 36800348 - 36800394
Alignment:
| Q |
95 |
ccaaggacagagggtgatgaagaagattgcatcattccaaaagaaat |
141 |
Q |
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| T |
36800348 |
ccaaggacagagggtgatgaagaagattgcatcattccaaaagaaat |
36800394 |
T |
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